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Python package and CLI for processing phylogenetic tree

Project description

evotree : a python library of processing phylogenetic tree

Hengchi Chen

Installation

Installation

The fossiler package can be readily installed via PYPI. An example command is given below.

virtualenv -p=python3 ENV (or python3/python -m venv ENV)
source ENV/bin/activate
pip install evotree

Note that if users want to get the latest update, it's suggested to install from the source because the update on PYPI will be later than here of source. To install from source, the following command can be used.

git clone https://github.com/heche-psb/evotree
cd evotree
virtualenv -p=python3 ENV (or python3 -m venv ENV)
source ENV/bin/activate
pip install -r requirements.txt
pip install .

If there is permission problem in the installation, please try the following command.

pip install -e .

Project details


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