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Send data to ExploSig

Project description

Build Status PyPI Open In Colab

ExploSig Connect

Helpers for sending data from a Python environment to ExploSig (via ExploSig Server) for web-based interactive visualization.

Installation

pip install explosig-connect

Example Usage - Connecting to an existing session

>>> from explosig_connect import connect

>>> # Connect using a session ID supplied by ExploSig.
>>> session_id = 'af6242f3'
>>> conn = connect(session_id)

>>> # Obtain the SBS mutation counts matrix associated with the session.
>>> sbs_counts_df = conn.get_mutation_category_counts('SBS')

>>> # You run some custom code to derive better signature exposures.
>>> exposures_df = my_exposures_computation_method(sbs_counts_df)

>>> # Send the new exposures back to ExploSig for visualization.
>>> conn.send_exposures('SBS', exposures_df)

Example Usage - Starting a new session

>>> from explosig_connect import connect

>>> # Start a new 'empty' session with no samples, signatures, etc. selected.
>>> # This will attempt to open ExploSig in a new browser tab that starts the session.
>>> conn = connect()

>>> # Send an SBS mutation counts matrix to visualize.
>>> conn.send_mutation_category_counts('SBS', my_sbs_counts_df)

>>> # Send an exposures matrix to visualize.
>>> conn.send_exposures('SBS', my_sbs_exposures_df)

>>> # Send a signatures matrix to visualize.
>>> conn.send_signatures('SBS', my_sbs_signatures_df)

Development

Build and install from the current directory.

python setup.py sdist bdist_wheel && pip install .

Project details


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