fadapa 0.3.1

FAstqc DAta PArser - A minimal parser to parse FastQC output data in Python

Welcome to Fadapa

FAstqc DAta PArser - The Easiest way to parse FastQC results.

Installation

1. Recomended way to install is using pip

pip install fadapa

2. Alternatively you can install with esay_install

easy_install fadapa

3. You can also install from Github source code.

cd
git clone https://github.com/fadapa/fadapa.git
cd fadapa
python setup.py install

Usage

# import fadapa
from fadapa import Fadapa

#load file
f = Fadapa('/path/to/fastqc_output_file.txt')

#get file name
print(f.file_name)

#get entire content
print(f.content())

#get all module names and their status
print(f.summary())

#get raw data of any module
print(f.raw_module('module name'))

#get cleaned data of any module
print(f.clean_data('module name'))

Author

Anand Reddy Pandikunta