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FAstqc DAta PArser - A minimal parser to parse FastQC output data in Python

Project Description

Welcome to Fadapa

FAstqc DAta PArser - The Easiest way to parse FastQC results.

Installation

1. Recomended way to install is using pip

pip install fadapa

2. Alternatively you can install with esay_install

easy_install fadapa

3. You can also install from Github source code.

cd
git clone https://github.com/fadapa/fadapa.git
cd fadapa
python setup.py install

Usage

# import fadapa
from fadapa import Fadapa

#load file
f = Fadapa('/path/to/fastqc_output_file.txt')

#get file name
print(f.file_name)

#get entire content
print(f.content())

#get all module names and their status
print(f.summary())

#get raw data of any module
print(f.raw_module('module name'))

#get cleaned data of any module
print(f.clean_data('module name'))
Release History

Release History

This version
History Node

0.3.1

History Node

0.3

History Node

0.2

History Node

0.1

Download Files

Download Files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

File Name & Checksum SHA256 Checksum Help Version File Type Upload Date
fadapa-0.3.1.tar.gz (3.3 kB) Copy SHA256 Checksum SHA256 Source Nov 4, 2014

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