FAstqc DAta PArser - A minimal parser to parse FastQC output data in Python
Project description
Welcome to Fadapa
FAstqc DAta PArser - The Easiest way to parse FastQC results.
Installation
1. Recomended way to install is using pip
pip install fadapa
2. Alternatively you can install with esay_install
easy_install fadapa
3. You can also install from Github source code.
cd git clone https://github.com/fadapa/fadapa.git cd fadapa python setup.py install
Usage
# import fadapa from fadapa import Fadapa #load file f = Fadapa('/path/to/fastqc_output_file.txt') #get file name print(f.file_name) #get entire content print(f.content()) #get all module names and their status print(f.summary()) #get raw data of any module print(f.raw_module('module name')) #get cleaned data of any module print(f.clean_data('module name'))
Project details
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Source Distribution
fadapa-0.3.1.tar.gz
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