Skip to main content

FAstqc DAta PArser - A minimal parser to parse FastQC output data in Python

Project description

Welcome to Fadapa

FAstqc DAta PArser - The Easiest way to parse FastQC results.

Status Build Coverage Latest Version Supported Python versions

Installation

1. Recomended way to install is using pip

pip install fadapa

2. Alternatively you can install with esay_install

easy_install fadapa

3. You can also install from Github source code.

cd
git clone https://github.com/fadapa/fadapa.git
cd fadapa
python setup.py install

Usage

# import fadapa
from fadapa import Fadapa

#load file
f = Fadapa('/path/to/fastqc_output_file.txt')

#get file name
print(f.file_name)

#get entire content
print(f.content())

#get all module names and their status
print(f.summary())

#get raw data of any module
print(f.raw_module('module name'))

#get cleaned data of any module
print(f.clean_data('module name'))

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Filename, size & hash SHA256 hash help File type Python version Upload date
fadapa-0.3.1.tar.gz (3.3 kB) Copy SHA256 hash SHA256 Source None Nov 4, 2014

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN SignalFx SignalFx Supporter DigiCert DigiCert EV certificate StatusPage StatusPage Status page