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FAstqc DAta PArser - A minimal parser to parse FastQC output data in Python

Project description

Welcome to Fadapa

FAstqc DAta PArser - The Easiest way to parse FastQC results.

Status Build Coverage Latest Version Supported Python versions

Installation

1. Recomended way to install is using pip

pip install fadapa

2. Alternatively you can install with esay_install

easy_install fadapa

3. You can also install from Github source code.

cd
git clone https://github.com/fadapa/fadapa.git
cd fadapa
python setup.py install

Usage

# import fadapa
from fadapa import Fadapa

#load file
f = Fadapa('/path/to/fastqc_output_file.txt')

#get file name
print(f.file_name)

#get entire content
print(f.content())

#get all module names and their status
print(f.summary())

#get raw data of any module
print(f.raw_module('module name'))

#get cleaned data of any module
print(f.clean_data('module name'))

Download files

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Source Distribution

fadapa-0.3.1.tar.gz (3.3 kB view hashes)

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