Fast Overlap

A tiny cython library to calculate the pairwise overlap of all cell masks between two time points. Created for use in https://github.com/Hekstra-Lab/microutil/

Install

pip install fast-overlap

Development

Installation

python setup.py build_ext -i

To really remove stuff and build + test:

rm *.so build/ fast_overlap.cpp -rf && python setup.py build_ext -i && python test_speedup.py

On Mac

You need to compile python extensions with the same compiler used to compile python. So on mac you should use clang. However the apple distributed clang doesn't include openmp so you should either use g++ locally (which seems to work for some reason, but doesn't for built wheels) or use homebrew clang as in the github workflows.

Metadata

Release files for fast-overlap 0.5.0

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for fast-overlap 0.5.0
File	Size	Uploaded
fast_overlap-0.5.0.tar.gz	208.4 kB	Jun 3, 2022	Details

Built distributions (wheels)

Table of built distributions (wheels) for fast-overlap 0.5.0
File	Interpreter	ABI	Platform	Reset
fast_overlap-0.5.0-cp310-cp310-win_amd64.whl 89.1 kB Jun 3, 2022	CPython 3.10	CPython 3.10	Windows x86-64	Details
fast_overlap-0.5.0-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl 664.1 kB Jun 3, 2022	CPython 3.10	CPython 3.10	Linux glibc 2.12+ x86-64	Details
fast_overlap-0.5.0-cp310-cp310-macosx_10_9_x86_64.whl 405.1 kB Jun 3, 2022	CPython 3.10	CPython 3.10	macOS 10.9+ x86-64	Details
fast_overlap-0.5.0-cp39-cp39-win_amd64.whl 90.2 kB Jun 3, 2022	CPython 3.9	CPython 3.9	Windows x86-64	Details
fast_overlap-0.5.0-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl 664.9 kB Jun 3, 2022	CPython 3.9	CPython 3.9	Linux glibc 2.12+ x86-64	Details
fast_overlap-0.5.0-cp39-cp39-macosx_10_9_x86_64.whl 400.8 kB Jun 3, 2022	CPython 3.9	CPython 3.9	macOS 10.9+ x86-64	Details
fast_overlap-0.5.0-cp38-cp38-win_amd64.whl 90.1 kB Jun 3, 2022	CPython 3.8	CPython 3.8	Windows x86-64	Details
fast_overlap-0.5.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl 705.1 kB Jun 3, 2022	CPython 3.8	CPython 3.8	Linux glibc 2.12+ x86-64	Details
fast_overlap-0.5.0-cp38-cp38-macosx_10_9_x86_64.whl 403.1 kB Jun 3, 2022	CPython 3.8	CPython 3.8	macOS 10.9+ x86-64	Details
fast_overlap-0.5.0-cp37-cp37m-win_amd64.whl 86.5 kB Jun 3, 2022	CPython 3.7	CPython 3.7 pymalloc	Windows x86-64	Details
fast_overlap-0.5.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl 600.4 kB Jun 3, 2022	CPython 3.7	CPython 3.7 pymalloc	Linux glibc 2.12+ x86-64	Details
fast_overlap-0.5.0-cp37-cp37m-macosx_10_9_x86_64.whl 399.6 kB Jun 3, 2022	CPython 3.7	CPython 3.7 pymalloc	macOS 10.9+ x86-64	Details

Total release size: 4.8 MB

Release files / fast_overlap-0.5.0.tar.gz

Download URL	fast_overlap-0.5.0.tar.gz
Size	208.4 kB
Tags	Source
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Uploaded via	`twine/4.0.1 CPython/3.9.13`

Release files / fast_overlap-0.5.0-cp310-cp310-win_amd64.whl

Download URL	fast_overlap-0.5.0-cp310-cp310-win_amd64.whl
Size	89.1 kB
Tags	CPython 3.10 Windows x86-64
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Upload date	Jun 3, 2022
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Uploaded via	`twine/4.0.1 CPython/3.9.13`

Release files / fast_overlap-0.5.0-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl

Download URL	fast_overlap-0.5.0-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl
Size	664.1 kB
Tags	CPython 3.10 Linux glibc 2.12+ x86-64
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Release files / fast_overlap-0.5.0-cp310-cp310-macosx_10_9_x86_64.whl

Download URL	fast_overlap-0.5.0-cp310-cp310-macosx_10_9_x86_64.whl
Size	405.1 kB
Tags	CPython 3.10 macOS 10.9+ x86-64
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Uploaded via	`twine/4.0.1 CPython/3.9.13`

Release files / fast_overlap-0.5.0-cp39-cp39-win_amd64.whl

Download URL	fast_overlap-0.5.0-cp39-cp39-win_amd64.whl
Size	90.2 kB
Tags	CPython 3.9 Windows x86-64
SHA-256 checksum How to use checksums	`28bc3e318c8926f21756f1301f9788fd4b52fa2cdc2bfcc8c2bb622231e3e530`
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Uploaded via	`twine/4.0.1 CPython/3.9.13`

Release files / fast_overlap-0.5.0-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl

Download URL	fast_overlap-0.5.0-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl
Size	664.9 kB
Tags	CPython 3.9 Linux glibc 2.12+ x86-64
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Release files / fast_overlap-0.5.0-cp39-cp39-macosx_10_9_x86_64.whl

Download URL	fast_overlap-0.5.0-cp39-cp39-macosx_10_9_x86_64.whl
Size	400.8 kB
Tags	CPython 3.9 macOS 10.9+ x86-64
SHA-256 checksum How to use checksums	`d3cf97c12aa5417b25bee925ccb9348d9e026550414aaab381cb4254d667fb9a`
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Release files / fast_overlap-0.5.0-cp38-cp38-win_amd64.whl

Download URL	fast_overlap-0.5.0-cp38-cp38-win_amd64.whl
Size	90.1 kB
Tags	CPython 3.8 Windows x86-64
SHA-256 checksum How to use checksums	`1743af41ae06503c5c611e6235b14f652f72e83b7eaf61af2a244ec21be1d517`
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Uploaded via	`twine/4.0.1 CPython/3.9.13`

Release files / fast_overlap-0.5.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl

Download URL	fast_overlap-0.5.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl
Size	705.1 kB
Tags	CPython 3.8 Linux glibc 2.12+ x86-64
SHA-256 checksum How to use checksums	`67c375fd635f6f3a78d86e56ae353ea01d09c735fe5b3392795a0aaabcc8486f`
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Release files / fast_overlap-0.5.0-cp38-cp38-macosx_10_9_x86_64.whl

Download URL	fast_overlap-0.5.0-cp38-cp38-macosx_10_9_x86_64.whl
Size	403.1 kB
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Release files / fast_overlap-0.5.0-cp37-cp37m-win_amd64.whl

Download URL	fast_overlap-0.5.0-cp37-cp37m-win_amd64.whl
Size	86.5 kB
Tags	CPython 3.7 CPython 3.7 pymalloc Windows x86-64
SHA-256 checksum How to use checksums	`653a97cf875df879f1d1a702356bc12af063b7c160e64b87fac009aa1d047603`
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Release files / fast_overlap-0.5.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl

Download URL	fast_overlap-0.5.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl
Size	600.4 kB
Tags	CPython 3.7 CPython 3.7 pymalloc Linux glibc 2.12+ x86-64
SHA-256 checksum How to use checksums	`e2f27b2780f92e4636ecca1b53b7b59c09a3d262d580eccd394df14b11e78220`
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Upload date	Jun 3, 2022
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Release files / fast_overlap-0.5.0-cp37-cp37m-macosx_10_9_x86_64.whl

Download URL	fast_overlap-0.5.0-cp37-cp37m-macosx_10_9_x86_64.whl
Size	399.6 kB
Tags	CPython 3.7 CPython 3.7 pymalloc macOS 10.9+ x86-64
SHA-256 checksum How to use checksums	`5ee54cb0cb3a29c316f4b1f913031f29e4a84c9fa68218d9daf1540e51510b6a`
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