A collection of Python scripts for working with FASTQ files.

Exported console scripts

  • validate-fastq-file

  • analyze-fastq-file

validate-fastq-file --infile ~/projects/fastq-file-utils/examples/sample_001_R1.fastq
--outdir was not specified and therefore was set to '/tmp/sundaram/fastq-file-utils/validate_fastq_file/2025-02-26-101734'
Created output directory '/tmp/sundaram/fastq-file-utils/validate_fastq_file/2025-02-26-101734'
--logfile was not specified and therefore was set to
'/tmp/sundaram/fastq-file-utils/validate_fastq_file/2025-02-26-101734/validate_fastq_file.log'
Valid FASTQ file with 3 records.
Detected Phred Encoding: Phred+33
Total Records: 3

Project links

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Latest release

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for jai-python3 from gravatar.com jai-python3

Credits

Author/Maintainer: Jaideep Sundaram

License

Not open source

Requires

Python >=3.10

Provides Extra

dev

Tags

fastq_file_utils

Classifiers

Report project as malware

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

fastq_file_utils-0.1.0.tar.gz (13.6 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

fastq_file_utils-0.1.0-py2.py3-none-any.whl (9.1 kB view details)

Uploaded Python 2Python 3

File details

Details for the file fastq_file_utils-0.1.0.tar.gz.

File metadata

  • Download URL: fastq_file_utils-0.1.0.tar.gz
  • Upload date:
  • Size: 13.6 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.1.0 CPython/3.10.12

File hashes

Hashes for fastq_file_utils-0.1.0.tar.gz
Algorithm Hash digest
SHA256 b3a0eb1a1690550e8ab54c3685a80965567c5af0b5b62d860b9b0148e3500a2c
MD5 4c6375e16fa6c6a4a9adf67922cf4405
BLAKE2b-256 92fabf9becc4a222c526e43ff22bd119c567782f4d46e56322a42d1a8c62d3fc

See more details on using hashes here.

File details

Details for the file fastq_file_utils-0.1.0-py2.py3-none-any.whl.

File metadata

File hashes

Hashes for fastq_file_utils-0.1.0-py2.py3-none-any.whl
Algorithm Hash digest
SHA256 fc3bf3f3eff423e0b54ed0a8bad6f9e1faf556c8442b4d4bfb50903ec82de2c1
MD5 90b01013b3f04599583e8bd7d27cad66
BLAKE2b-256 9a4683ae36a469ad1ad2d611de809a1de9571cc4256a10f7afe1b25d53438ebf

See more details on using hashes here.

Release history Release notifications | RSS feed

This release

0.1.0 This release

2 files

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Sentry Error logging StatusPage Status page