Fenominal: Phenomenal text mining for disease and phenotype concepts

Rust implementation of the exact-matching algorithm from fenominal. Fenomimal implements mining of Human Phenotype Ontology (HPO) terms from clinical texts.

Test drive

This project is in an early stage, but a simple run is possible and reveals the term Macrocephaly. The other term is not captured because synonyms are not yet implemented by Ontoloius

 cargo run --bin fenominal_main  -- --hp /path/hp.json --input "intellectual disability (IQ 65), macrocephaly and dysmorphisms"

This will show the identified HPO terms and also will return a JSON string that could be adapted for use in a front end.

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Data verified by PyPI on Aug 2, 2026
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Data verified by PyPI on Aug 2, 2026
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License

MIT

Requires

Python >=3.7

Tags

Human Phenotype Ontology hpo phenotype

Classifiers

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