Module for reading datasets shared on FASTGenomics

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FASTGenomics Reader Module for Python

This package implements convenience functions for loading datasets in the FASTGenomics analysis environment. The functions from this package will let you list and load datasets for which the analysis was defined.

Documentation

For the general documentation on how to use the reader, please visit our FASTGenomics Documentation.

For details on the available functions see the API Documentation.

Known issues

Please report the issues through github.

Development and testing

Clone the repository along with the test data by running

git clone --recurse-submodules git@github.com:FASTGenomics/fgread-py.git

Then enter the fgread-py directory and install the dependencies with

flit install --deps all

To test the package use

python3 -m pytest

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