fhir-reada 0.1.1

A FHIR cohort extractor and de-identification tool for clinical research.

FHIR-READA

FHIR Research Extractor And De-identified Analyzer

A Python CLI tool for extracting, de-identifying, and exporting patient data from FHIR servers — built for research teams, clinicians, and medical institutions.

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🔍 Features

• Filter patients by age range and diagnosis
• Extract from any FHIR-compliant server
• Fetch Conditions and Observations
• Automatically de-identify patient IDs
• Export results to CSV
• Easy-to-use CLI with flexible filters

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💻 Installation

From PyPI

pip install fhir-reada

From Source (for development or testing)

git clone https://github.com/TOduah/fhir-reada.git
cd fhir-reada
pip install -e .

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🚀 Usage (CLI)

fhir-reada --url https://hapi.fhir.org/baseR4 --min-age 25 --max-age 40 --diagnosis diabetes --out output.csv

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⚙️ CLI Options

Option	Description
--url	FHIR base URL (e.g. https://hapi.fhir.org/baseR4)
--min-age	Minimum age for cohort (e.g. 25)
--max-age	Maximum age for cohort (e.g. 40)
--diagnosis	Diagnosis keyword (optional, e.g. diabetes)
--out	Output filename for CSV export

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🏥 Who Is This For?

• Research institutions running clinical studies
• Hospital data science or IT departments
• Medical schools teaching FHIR and analytics
• Independent developers working with public or private FHIR APIs

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📄 License

This project is licensed under the MIT License.

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💬 Author

Built by Tobenna Oduah.