fhirkit-rs
FHIR R4 for Python, in Rust. It covers all 146 resources and every
datatype, generated from the official specification. JSON goes in and
out without loss: decimals stay Decimal (72.50 stays 72.50), and
extensions on primitives survive. Validation reports every problem
with the element's path, not only the first.
pip install fhirkit-rs
import fhirkit
r = fhirkit.parse(open("patient.json", "rb").read()) # str, bytes or dict
r.resource_type, r.id, r.issues # ('Patient', 'example', [])
for issue in fhirkit.validate({"resourceType": "Observation", "valueString": "x", "valueBoolean": True}):
print(issue)
# error at Observation.value[x]: only one type may be given, found valueString, valueBoolean
# error at Observation.status: required element missing
# error at Observation.code: required element missing
fhirkit.parse(data, strict=True) # raises fhirkit.ValidationError(.issues) on any error
fhirkit.parse_many(items) # many at once, on all cores, GIL released
r.to_dict() # plain Python values, decimals as decimal.Decimal
r.to_json(pretty=True) # canonical FHIR JSON
fhirkit validate *.json # exit 1 if any resource has an error
fhirkit format patient.json # canonical, pretty-printed
- R4 (4.0.1). fhir.resources dropped plain R4 in its 7.0 release.
- Zero runtime dependencies. One abi3 wheel per platform covers Python 3.9 and later.
- Conformance. All 5,309 examples in the official R4 examples package read and write back unchanged.
- Fast. On an M2 Max, the 5,309 R4 examples (188 MB) are read and
validated in 0.56 s with
parse_many, against 14.0 s for fhir.resources 6.5 (25×). Written back without changing a single value, where fhir.resources alters 197 decimals. Details: BENCH.md.
The PyPI name is fhirkit-rs because fhirkit on PyPI is an unrelated
project; the import name is fhirkit. The Rust crate is
fhirkit. Typed search, FHIRPath and
SQL-on-FHIR are coming; see the
roadmap.
1 maintainer
Metadata
1 maintainer
Release files for fhirkit-rs 0.1.0
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
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| fhirkit_rs-0.1.0.tar.gz | 341.2 kB | With provenance | Details |
Built distributions (wheels)
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| fhirkit_rs-0.1.0-cp39-abi3-win_amd64.whl | CPython 3.9 | abi3 | Windows x86-64 | Details |
| fhirkit_rs-0.1.0-cp39-abi3-musllinux_1_2_x86_64.whl | CPython 3.9 | abi3 | Linux musl 1.2+ x86-64 | Details |
| fhirkit_rs-0.1.0-cp39-abi3-manylinux_2_28_x86_64.whl | CPython 3.9 | abi3 | Linux glibc 2.28+ x86-64 | Details |
| fhirkit_rs-0.1.0-cp39-abi3-manylinux_2_28_aarch64.whl | CPython 3.9 | abi3 | Linux glibc 2.28+ ARM64 | Details |
| fhirkit_rs-0.1.0-cp39-abi3-macosx_10_12_x86_64.macosx_11_0_arm64.macosx_10_12_universal2.whl | CPython 3.9 | abi3 | macOS 11.0+ ARM64, macOS 10.12+ universal2 (ARM64, x86-64), macOS 10.12+ x86-64 | Details |
Total release size: 20.1 MB
Release files / fhirkit_rs-0.1.0.tar.gz
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