Segmentation free factor analysis for sub-micron resolution spatial transcriptomics
Project description
FICTURE
2025-05: we implemented a new version in a c++ command line tool that is substantially more efficiency and (hopefully) easier to use. If you are interested in applying FICTURE to large datasets we would love to have you try it out.
FICTURE: Scalable segmentation-free analysis of sub-micron resolution spatial transcriptomics
Install
pip install ficture
Documentation https://seqscope.github.io/ficture/
Paper (Real data results in the preprint are available on Zenodo)
For a brief introduction, see slides used for AGBT talk
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