This software will download the latest Life-Line version of Fiji, make the correct cross-platform binary available and provide a macro submodule which makes automation of Fiji trivial from python.
Video demo
Current Fiji Life-Line version in this package is 2014 November 25.
If you experience any trouble with this module, please submit an issue or send a pull request on github.
Install
pip install fijibin
Usage
>>> import fijibin
>>> fijibin.BIN
'/Users/arve/.bin/Fiji.app/Contents/MacOS/ImageJ-macosx'
>>> fijibin.FIJI_VERSION
'20141125'fijibin.BIN will point to linux, mac or windows version, depending on the operating system detected via platform.
Macros
import fijibin.macro
macro.run(macro_string_or_list_of_strings)Refetch binary
>>> from fijibin.fetch import fetch
>>> fetch()See more in the API reference.
Development
Install dependencies and link development version of fijibin to pip:
git clone https://github.com/arve0/fijibin
cd fijibin
pip install -r requirements.txtrun test
pip install tox
toxextra output, jump into pdb upon error
DEBUG=fijibin tox -- --pdb -sbuild api reference
pip install -r docs/requirements.txt
make docs1 maintainer
Metadata
1 maintainer
Release files for fijibin 0.3.0
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
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| fijibin-0.3.0.tar.gz | 727.7 kB | Without provenance | Details for fijibin-0.3.0.tar.gz |
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| File | Interpreter | ABI | Platform | Actions Reset |
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| fijibin-0.3.0-py3-none-any.whl | Python 3 | none | any | Details for fijibin-0.3.0-py3-none-any.whl |
Total release size: 735.6 kB
Release files / fijibin-0.3.0.tar.gz
| Download URL | fijibin-0.3.0.tar.gz |
|---|---|
| Size | 727.7 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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Release files / fijibin-0.3.0-py3-none-any.whl
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|---|---|
| Size | 7.9 kB |
| Tags | Python 3 |
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Security for fijibin 0.3.0
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