fijibin

This software will download the latest Life-Line version of Fiji, make the correct cross-platform binary available and provide a macro submodule which makes automation of Fiji trivial from python.

Video demo

Current Fiji Life-Line version in this package is 2014 November 25.

If you experience any trouble with this module, please submit an issue or send a pull request on github.

Install

pip install fijibin

Usage

>>> import fijibin
>>> fijibin.BIN
'/Users/arve/.bin/Fiji.app/Contents/MacOS/ImageJ-macosx'
>>> fijibin.FIJI_VERSION
'20141125'

fijibin.BIN will point to linux, mac or windows version, depending on the operating system detected via platform.

Macros

import fijibin.macro
macro.run(macro_string_or_list_of_strings)

Refetch binary

>>> from fijibin.fetch import fetch
>>> fetch()

See more in the API reference.

Development

Install dependencies and link development version of fijibin to pip:

git clone https://github.com/arve0/fijibin
cd fijibin
pip install -r requirements.txt

run test

pip install tox
tox

extra output, jump into pdb upon error

DEBUG=fijibin tox -- --pdb -s

build api reference

pip install -r docs/requirements.txt
make docs

Release files for fijibin 0.3.0

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for fijibin 0.3.0
File	Size	Uploaded
fijibin-0.3.0.tar.gz	727.7 kB	Apr 22, 2015	Details

Built distribution (wheel)

Table of built distributions (wheels) for fijibin 0.3.0
File	Interpreter	ABI	Platform	Reset
fijibin-0.3.0-py3-none-any.whl 7.9 kB Apr 22, 2015	Python 3	none	any	Details

Total release size: 735.6 kB

Release files / fijibin-0.3.0.tar.gz

Download URL	fijibin-0.3.0.tar.gz
Size	727.7 kB
Tags	Source
SHA-256 checksum How to use checksums	`b34011dba7e1be401495784cc567cb4c962aed5fd9adfe6e92b2f09cb1bd4835`
BLAKE2b-256 checksum How to use checksums	`f0759f28bf033a8caa912d97f54f3e8727f424eab38d30ec5a04471e715e646e`
Upload date	Apr 22, 2015
Uploaded using Trusted Publishing? What is trusted publishing?	No

Release files / fijibin-0.3.0-py3-none-any.whl

Download URL	fijibin-0.3.0-py3-none-any.whl
Size	7.9 kB
Tags	Python 3
SHA-256 checksum How to use checksums	`9aa1ed721994c8820f58c4510f15c5557f4eff99ba93b28478f5180bbbc7653c`
BLAKE2b-256 checksum How to use checksums	`0a5b286d0b728371fd9e4e43e9e270fda2fb91eeb6041d6bde83f6b08702ef14`
Upload date	Apr 22, 2015
Uploaded using Trusted Publishing? What is trusted publishing?	No