filoc 0.0.9

eases the saving and reading of files within a structured folder tree

FiLoc File Locator

Save, read and analyze files in structured folders: Your files are the database.

Machine Learning Swiss Knife

See the following example

In machine learning, we use it to create simulation hyperparameters set, schedule simulations, record results, and analyze hundreds of machine learning experiences without the need of any database nor external services.

Basic

import os
from filoc import Filoc

loc = Filoc('/data/simid={simid:d}/epid={epid:d}/settings.json') 

#--------------------------------------------------------------
# Build the path for simid=0 and epid=1, then write to the file
#--------------------------------------------------------------
path1 = loc.get_path(simid=0, epid=1)  # /data/simid=0/epid=1/settings.json
os.makedirs(os.path.dirname(path1))
with open(path1, 'w') as f:
    f.write('Coucou')

#--------------------------------------------------------------
# Same for simid=0 and epid=1 with a more compact syntax
#--------------------------------------------------------------
with loc.open(dict(simid=0, epid=2), 'w') as f:  # file handle to /data/simid=0/epid=2/settings.json
    f.write('Salut')

#--------------------------------------------------------------
# Find all files on file system having simid=0
#--------------------------------------------------------------
paths = loc.find_paths(simid=0)          # ['/data/simid=0/epid=1/settings.json', '/data/simid=0/epid=2/settings.json']

#--------------------------------------------------------------
# Extract properties for path paths[0]
#--------------------------------------------------------------
props = loc.get_path_properties(paths[0]) # { 'simid': 0, 'epid': 1 }

#--------------------------------------------------------------
# More compact form to get both the paths and their related properties
#--------------------------------------------------------------
for path, props in loc.find_paths_and_properties(simid=0):
    print(path, props)

#--------------------------------------------------------------
# Analyse all files and build a report
#--------------------------------------------------------------
def get_file_report(f):
    content = f.read()
    return { 'content_length' : len(content) }

report = loc.report(dict(simid=0), get_file_report, 'r')

print(report) #-> [{"simid":0, "epid":1, "content_length":6}, {"simid":0, "epid":2, "content_length":5}]

from pandas import DataFrame
print(DataFrame(report)) #-> convert report to pandas DataFrame 

#--------------------------------------------------------------
# Analyse all files and build a report
#--------------------------------------------------------------
def my_analysis(f):
    content = f.read()
    return { 'content_length' : len(content) }

fimap = Filoc(loc, my_analysis)

report = fimap.read_contents(simid=0)

print(report) #-> [{"simid":0, "epid":1, "content_length":6}, {"simid":0, "epid":2, "content_length":5}]

from pandas import DataFrame
print(DataFrame(report)) #-> convert report to pandas DataFrame 

Install

pip install filoc

Syntax

The FiLoc constructor accepts a file path/url, which will finally be interpreted by fsspec. That way, it is possible to access ftp, HDFS or any other file repository supported by fsspec. The path is at the same time a format string with named placeholder, which will be parsed by the parse library. Each placeholder defines a property associated to the files to save, retrieve or analyse.

ToDos

• Readme Doc
• API Doc
• File locking
• Unit Test
  • Multiloc with different aggregation layers (snowflake)
  • File locking
• Dev: Logging of edited files
• Dev: File watcher
• Dev: Excel File watcher / binder