finitewave-model-mitchell-schaeffer 0.6.0

Mitchell-Schaeffer Finitewave model

This is a phenomenological two-variable model capturing the essence of cardiac action potential dynamics using a simplified formulation. It separates inward and outward currents and uses a single gating variable to regulate excitability.

This model implementation can be used separately from the Finitewave, allowing for standalone simulations and testing of the model dynamics without the need for the entire framework.

Reference

Mitchell, C. C., & Schaeffer, D. G. (2003). A two-current model for the dynamics of cardiac membrane potential. Bulletin of Mathematical Biology, 65, 767–793.

DOI: https://doi.org/10.1016/S0092-8240(03)00041-7

How to use (quickstart)

python -m examples.mitchell_schaeffer_example

How to test

python -m pytest -q

Repository structure

.
├── mitchell_schaeffer/               # equations package (ops.py)
│   ├── __init__.py
│   └── ops.py                        # fill with the model equations (pure functions)
├── implementation/                   # 0D model implementation
│   ├── __init__.py
│   └── mitchell_schaeffer_0d.py
├── example/
│   └── mitchell_schaeffer_example.py # minimal script to run a short trace
├── tests/
│   └── mitchell_schaeffer_test.py    # smoke test; extend with reproducibility checks
├── .gitignore
├── LICENSE                           # MIT
├── pyproject.toml                    # placeholders to replace
└── README.md                         # this file

Variables

• u — Transmembrane potential (dimensionless)
• h — Gating variable (dimensionless)

Parameters

Parameters and their defualt values

• tau_close = 150.0 - Inactivation time constant (closing).
• tau_open = 120.0 - Recovery time constant (opening).
• tau_out = 6.0 - Time constant for outward current (repolarization)
• tau_in = 0.3 - Time constant for inward flow.
• u_gate = 0.13 - Threshold potential for switching gate dynamics.