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A FISH probe design web interface.

Project description

IMPORTANT! The fish-prode Python package has been renamed ifpd. Check there for newer versions.

FISH-ProDe v1.1.0.post2

FISH Probe Design (FISH-ProDe, pronounced "pro‧de", "brave" or "valiant" in italian) is a Python3 package suite of tools for selection of complementary oligonucleotides to build FISH probes. It also includes a web interface to simplify the selection and remove any need for programming skills.

Read the documentation for more details.


Install from pypi with sudo -H pip3 install fish-prode, and that's it! That's as easy as it gets.

You can also install from github (any point in history, although we suggest to stick with release tags) as follows:

git clone
cd fish-prode
sudo -H pip3 install -e .


More details on how to run FISH-ProDe are available in the documentation.


We welcome any contributions to FISH-ProDe. Please, refer to the contribution guidelines if this is your first time contributing! Also, check out our code of conduct.


MIT License
Copyright (c) 2017-2018 Gabriele Girelli

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