Zebrafish Tail Animator
Python toolbox to transform zebrafish tracking data to tail animations
Description
zf_animator is a Python package used to create visualisation of how swimming data looks from high-speed tracking data.
The typical data used should be the tail angle along segments of the tail.
The package will convert these tail angles to x- y- coordinates, and interpolate many more points along the range of tracked tail segments.
These sets of coordinates will then transform slices of the zebrafish image, producing a stack of .png files that can be rendered into an mp4 file.
Installation
To convert the .png files to an .mp4 animation requires ffmpeg to be installed on the running computer.
This can be install in Ubuntu in the terminal:
sudo apt install ffmpeg
Or with OS X can be installed:
brew install ffmpeg
Check it is installed by running which ffmpeg in the terminal. More details can be found here.
Dependencies
Default zebrafish image
Ref the source of the image
Example
Key Functions
1 maintainer
Metadata
1 maintainer
Release files for fish-simulator-test 0.0.2
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| fish_simulator_test-0.0.2.tar.gz | 9.4 kB | Without provenance | Details for fish_simulator_test-0.0.2.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| fish_simulator_test-0.0.2-py3-none-any.whl | Python 3 | none | any | Details for fish_simulator_test-0.0.2-py3-none-any.whl |
Total release size: 18.7 kB
Release files / fish_simulator_test-0.0.2.tar.gz
| Download URL | fish_simulator_test-0.0.2.tar.gz |
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| Size | 9.4 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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Release files / fish_simulator_test-0.0.2-py3-none-any.whl
| Download URL | fish_simulator_test-0.0.2-py3-none-any.whl |
|---|---|
| Size | 9.2 kB |
| Tags | Python 3 |
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SHA-256 checksum How to use checksums |
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No |
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twine/4.0.2 CPython/3.11.3
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