fiXr
Open xrif archives from Python directly using the xrif library.
Example
from fixr import xrif2numpy
import logging
logging.basicConfig(level='DEBUG')
fh = open('example_data/camwfs_20240315225750994842000.xrif', 'rb')
data = xrif2numpy(fh)
which will print something like
DEBUG:fixr:xrif compression details:
difference method: previous
reorder method: bytepack
compression method: LZ4
LZ4 acceleration: 1
dimensions: 120 x 120 x 1 x 512
raw size: 14745600 bytes
encoded size: 7446095 bytes
ratio: 0.505
The file ends with the timing information for the frames, stored as a separate xrif section:
timings = xrif2numpy(fh)
Each row contains the frame index, acquisition timestamp (as integer seconds and integer nanoseconds), and write timestamp (again as two integers).
>>> timings.shape
(787, 1, 1, 5)
>>> timings.dtype
dtype('uint64')
Sometimes you don't want to decompress all the data just to read the (uncompressed) timings, so this helper function skips (using fixr.skip()) over the first XRIF header + data chunk.
>>> timings = fixr.read_streamwriter_timings(fh)
>>> timings[0], timings[-1]
(array([[[ 24211485, 1710543470, 994842000, 1710543470, 994896666]]],
dtype=uint64), array([[[ 24211996, 1710543471, 278731000, 1710543471, 278787539]]],
dtype=uint64))
If you need both, this convenience function returns a (data, timings) tuple (assuming fh is a seekable file containing at least two XRIF headers).
>>> data, timings = fixr.read_streamwriter_archive(fh)
>>> data.shape, timings.shape
((512, 1, 120, 120), (512, 1, 1, 5))
For an example that uses the C xrif lib more directly, see minimal_ex.py.
Changelog
0.2.3
- Add
skip()function to seek to the end of an XRIF archive - Add
read_streamwriter_timings()andread_streamwriter_archive()helpers for XWCL streamwriters which attach timing info as a trailer following compressed data. - Expand docstrings, add tests for new functionality
0.2.2 (never pushed to PyPI)
- Add a monkey-patch to the
_xrif.xrif_read_headerargtypes to make ARM work
0.2.1
- Fix macOS-ism (using
.dylibinstead of.soto load library) - Declare NumPy >= 2.0 dependency
- Update various bits of CI machinery
0.2.0
0.1.0
- Initial release
1 maintainer
Metadata
1 maintainer
Release files for fixr 0.2.3
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| fixr-0.2.3.tar.gz | 5.7 kB | With provenance | Details for fixr-0.2.3.tar.gz |
Built distributions (wheels)
Total release size: 10.0 MB
Release files / fixr-0.2.3.tar.gz
| Download URL | fixr-0.2.3.tar.gz |
|---|---|
| Size | 5.7 kB |
| Tags | Source |
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|---|---|
| Size | 528.9 kB |
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|---|---|
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