flagserpy is a python API for the flagser C++ library by Daniel Lütgehetmann which computes the homology of directed flag complexes, it’s forked from pyflagser which is no longer being actively maintained. Please check out the original luetge/flagser GitHub repository for more information.
Project genesis
pyflagser is the result of a collaborative effort between L2F SA, the Laboratory for Topology and Neuroscience at EPFL, and the Institute of Reconfigurable & Embedded Digital Systems (REDS) of HEIG-VD. flagserpy is a continuation of this project by Jason P. Smith (NTU) and the Algebraic Topology and Networks in Biology of the Max Planck Institute of Molecular Cell Biology and Genetics.
Installation
Dependencies
flagserpy requires:
Python (>= 3.8)
NumPy (>= 1.17.0)
SciPy (>= 0.17.0)
User installation
If you already have a working installation of numpy and scipy, the easiest way to install flagserpy is using pip
python -m pip install -U flagserpy
Documentation
API reference (stable release): https://docs-pyflagser.giotto.ai
Contributing
We welcome new contributors of all experience levels.
Developer installation
C++ dependencies:
C++14 compatible compiler
CMake >= 3.15
Source code
You can check the latest sources with the command:
git clone https://github.com/TopNetBio/flagserpy.git
To install:
From the cloned repository’s root directory, run
python -m pip install -e ".[tests]"This way, you can pull the library’s latest changes and make them immediately available on your machine.
Testing
After installation, you can launch the test suite from outside the source directory:
pytest flagserpy
Changelog
See the RELEASE.rst file for a history of notable changes to flagserpy.
Important links
Official source code repo: https://github.com/TopNetBio/flagserpy
Download releases: https://pypi.org/project/flagserpy/
Issue tracker: https://github.com/TopNetBio/flagserpy/issues
Contacts:
1 maintainer
Metadata
1 maintainer
Release files for flagserpy 0.1.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
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|---|---|---|---|
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Built distributions (wheels)
Total release size: 14.7 MB
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