Python Bindings for FlatGFA
This is a Python interface for the FlatGFA library, which provides an efficient representation for pangenomic variation graphs in the Graphical Fragment Assembly (GFA) format.
You can install it from PyPI:
$ pip install flatgfa
Then, read the API documentation for details about what it can do so far.
Development
To build this library, first install Maturin:
$ pipx install maturin
Next, we'll build and install the Python library in our virtualenv. Starting from the repository root:
$ uv venv # Unless you already created the virtualenv.
$ uv pip install pip # Maturin depends on pip.
$ source .venv/bin/activate
$ cd flatgfa-py
$ maturin develop
Now the flatgfa module is available to Python programs.
Try our example:
$ python example.py
Or run the tests:
$ uv pip install pytest
$ pytest
1 maintainer
Metadata
1 maintainer
Release files for flatgfa 0.2.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
|---|---|---|---|---|
| flatgfa-0.2.0.tar.gz | 33.6 kB | Without provenance | Details |
Built distributions (wheels)
| File | Reset | |||
|---|---|---|---|---|
| flatgfa-0.2.0-cp38-abi3-win_amd64.whl | CPython 3.8 | abi3 | Windows x86-64 | Details |
| flatgfa-0.2.0-cp38-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl | CPython 3.8 | abi3 | Linux glibc 2.17+ x86-64 | Details |
| flatgfa-0.2.0-cp38-abi3-macosx_11_0_arm64.whl | CPython 3.8 | abi3 | macOS 11.0+ ARM64 | Details |
| flatgfa-0.2.0-cp38-abi3-macosx_10_12_x86_64.whl | CPython 3.8 | abi3 | macOS 10.12+ x86-64 | Details |
Total release size: 1.9 MB
Release files / flatgfa-0.2.0.tar.gz
| Download URL | flatgfa-0.2.0.tar.gz |
|---|---|
| Size | 33.6 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
maturin/1.5.1
|
Release files / flatgfa-0.2.0-cp38-abi3-win_amd64.whl
| Download URL | flatgfa-0.2.0-cp38-abi3-win_amd64.whl |
|---|---|
| Size | 172.9 kB |
| Tags | CPython 3.8 Windows x86-64 abi3 |
|
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Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
maturin/1.5.1
|
Release files / flatgfa-0.2.0-cp38-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
| Download URL | flatgfa-0.2.0-cp38-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
|---|---|
| Size | 1.1 MB |
| Tags | CPython 3.8 Linux glibc 2.17+ x86-64 abi3 |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
maturin/1.5.1
|
Release files / flatgfa-0.2.0-cp38-abi3-macosx_11_0_arm64.whl
| Download URL | flatgfa-0.2.0-cp38-abi3-macosx_11_0_arm64.whl |
|---|---|
| Size | 286.1 kB |
| Tags | CPython 3.8 abi3 macOS 11.0+ ARM64 |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
maturin/1.5.1
|
Release files / flatgfa-0.2.0-cp38-abi3-macosx_10_12_x86_64.whl
| Download URL | flatgfa-0.2.0-cp38-abi3-macosx_10_12_x86_64.whl |
|---|---|
| Size | 288.5 kB |
| Tags | CPython 3.8 abi3 macOS 10.12+ x86-64 |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
maturin/1.5.1
|
Security for flatgfa 0.2.0
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No provenance found
None of the files in this release were uploaded with provenance metadata.
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