flatgfa 0.1.3

efficient processing of pangenomes in Graphical Fragment Assembly (GFA) format

Python Bindings for FlatGFA

This is a Python wrapper for the FlatGFA library. Read the API documentation for details about what it can do so far.

To build it, first install Maturin:

pipx install maturin

Next, we'll build and install the Python library in our virtualenv. Starting from the repository root:

uv venv  # Unless you already created the virtualenv.
uv pip install pip  # Maturin depends on pip.
source .venv/bin/activate
cd flatgfa-py
maturin develop

Now the flatgfa module is available to Python programs. Try our example:

python example.py

Or run the tests:

uv pip install pytest
pytest