Pre-release

This release is a pre-release and may not be stable for production use.

Flatrtree - Python

Flatrtree is a serialization format and set of libraries for reading and writing R-trees. It's directly inspired by Flatbush and FlatGeobuf, and aims to make tiny, portable R-trees accessible in new contexts.

Store R-trees to disk or transport them over a network.
Build R-trees in one language and query them in another.
Query R-trees before reading the data they index.

Installation

$ pip install flatrtree

Flatrtree requires Python 3.9 or newer. Prebuilt Linux wheels target glibc 2.28+ (manylinux_2_28) or musl 1.2+ and are published for x86-64 and ARM64 only. Windows wheels are 64-bit only, and PyPy wheels are built for PyPy 3.11 only. On other systems, pip builds Flatrtree from source, which requires a C and C++ compiler and the Python development headers (commonly packaged as python3-dev or python3-devel).

Usage

Flatrtree separates building and querying behavior. The builder doesn’t know how to query an index and the index doesn’t know how it was built. This is inspired by FlatBuffers.

import flatrtree

# Add items to a builder object
builder = flatrtree.HilbertBuilder() # or OMTBuilder or your own
for i, item in enumerate(items):
    # The first argument is an integer reference to the item being indexed
    builder.add(i, item.minx, item.miny, item.maxx, item.maxy)

degree = 10 # node capacity

# Create an R-tree object from the builder
rtree = builder.finish(degree)

# Search for items that intersect a bounding box
for i in rtree.search(minx, miny, maxx, maxy):
    item = items[i]
    # ...

# Supply a function for calculating the distance between bounding boxes
# Planar and geodetic functions are included in the library
box_dist = flatrtree.planar_box_dist

# Find the nearest neighbors with a custom halt condition
for i, dist in rtree.neighbors(x, y, box_dist):
    if dist > maxDist:
        break
    item = item[i]
    dist # units match the given box distance function

Serialization

Flatrtree uses protocol buffers for serialization, taking advantage of varint encoding to reduce the output size in bytes. There are many tradeoffs to explore for serialization and this seems like a good place to start. It wouldn’t be hard to roll your own format with something like FlatBuffers if that better fit your needs.

# Specify the level of decimal precision you need.
# The output size will decrease as precision decreases.
precision = 7

# Serialize to bytes for storage and/or transport.
data = flatrtree.serialize(rtree, precision)

# Load the R-tree from bytes.
rtree = flatrtree.deserialize(data)

Example Usage

This example builds an R-tree from a newline-delimited GeoJSON file and stores it to disk. The R-tree holds the offset of each feature from the beginning of the file.

import json
import flatrtree
from shapely.geometry import shape

builder = flatrtree.HilbertBuilder()

with open("us-block-groups.json") as f:
    pos = f.tell()
    line = f.readline()

    while line:
        feature = json.loads(line)
        geom = shape(feature["geometry"])
        minx, miny, maxx, maxy = geom.bounds

        builder.add(pos, minx, miny, maxx, maxy)

        pos = f.tell()
        line = f.readline()


rtree = builder.finish(flatrtree.DEFAULT_DEGREE)

with open("us-block-groups.json.idx", "wb") as f:
    f.write(flatrtree.serialize(rtree, precision=6))

The next example reads the R-tree from disk and searches by a bounding box to find the relevant features. By seeking directly to the GeoJSON features returned by the search, we only read and parse the required data.

import json
import flatrtree

with open("us-block-groups.json.idx", "rb") as f:
    rtree = flatrtree.deserialize(f.read())

results = []
with open("tests/us-block-groups.json") as f:
    minx, miny, maxx, maxy = -96.985931, 32.630123, -96.571198, 32.914180
    for pos in rtree.search(minx, miny, maxx, maxy):
        f.seek(pos)
        feature = json.loads(f.readline())
        results.append(feature)

The next example finds all neighbors with bounds intersecting a radius of the given point.

import json
import flatrtree

with open("us-block-groups.json.idx", "rb") as f:
    rtree = flatrtree.deserialize(f.read())

neighbors = []
with open("us-block-groups.json") as f:
    x, y = -96.985931, 32.630123
    for pos, meters in rtree.neighbors(x, y, flatrtree.geodetic_box_dist):
        if meters > 500:
            break
        f.seek(pos)
        feature = json.loads(f.readline())
        neighbors.append(feature)

Release files for flatrtree 1.0.0rc3

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for flatrtree 1.0.0rc3
File	Size	Uploaded
flatrtree-1.0.0rc3.tar.gz	250.0 kB	Sep 1, 2026	Details

Built distributions (wheels)

Table of built distributions (wheels) for flatrtree 1.0.0rc3
File	Interpreter	ABI	Platform	Reset
flatrtree-1.0.0rc3-pp311-pypy311_pp73-win_amd64.whl 294.9 kB Sep 1, 2026	PyPy 3.11	PyPy 3.11 7.3	Windows x86-64	Details
flatrtree-1.0.0rc3-pp311-pypy311_pp73-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl 112.3 kB Sep 1, 2026	PyPy 3.11	PyPy 3.11 7.3	Linux glibc 2.28+ x86-64, Linux glibc 2.24+ x86-64	Details
flatrtree-1.0.0rc3-pp311-pypy311_pp73-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl 108.9 kB Sep 1, 2026	PyPy 3.11	PyPy 3.11 7.3	Linux glibc 2.28+ ARM64, Linux glibc 2.24+ ARM64	Details
flatrtree-1.0.0rc3-pp311-pypy311_pp73-macosx_11_0_arm64.whl 96.9 kB Sep 1, 2026	PyPy 3.11	PyPy 3.11 7.3	macOS 11.0+ ARM64	Details
flatrtree-1.0.0rc3-pp311-pypy311_pp73-macosx_10_15_x86_64.whl 97.6 kB Sep 1, 2026	PyPy 3.11	PyPy 3.11 7.3	macOS 10.15+ x86-64	Details
flatrtree-1.0.0rc3-cp314-cp314-win_amd64.whl 342.8 kB Sep 1, 2026	CPython 3.14	CPython 3.14	Windows x86-64	Details
flatrtree-1.0.0rc3-cp314-cp314-win32.whl 331.0 kB Sep 1, 2026	CPython 3.14	CPython 3.14	Windows x86-32	Details
flatrtree-1.0.0rc3-cp314-cp314-musllinux_1_2_x86_64.whl 1.9 MB Sep 1, 2026	CPython 3.14	CPython 3.14	Linux musl 1.2+ x86-64	Details
flatrtree-1.0.0rc3-cp314-cp314-musllinux_1_2_aarch64.whl 1.8 MB Sep 1, 2026	CPython 3.14	CPython 3.14	Linux musl 1.2+ ARM64	Details
flatrtree-1.0.0rc3-cp314-cp314-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl 885.5 kB Sep 1, 2026	CPython 3.14	CPython 3.14	Linux glibc 2.28+ x86-64, Linux glibc 2.24+ x86-64	Details
flatrtree-1.0.0rc3-cp314-cp314-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl 865.6 kB Sep 1, 2026	CPython 3.14	CPython 3.14	Linux glibc 2.28+ ARM64, Linux glibc 2.24+ ARM64	Details
flatrtree-1.0.0rc3-cp314-cp314-macosx_11_0_arm64.whl 194.1 kB Sep 1, 2026	CPython 3.14	CPython 3.14	macOS 11.0+ ARM64	Details
flatrtree-1.0.0rc3-cp314-cp314-macosx_10_15_x86_64.whl 195.9 kB Sep 1, 2026	CPython 3.14	CPython 3.14	macOS 10.15+ x86-64	Details
flatrtree-1.0.0rc3-cp313-cp313-win_amd64.whl 332.5 kB Sep 1, 2026	CPython 3.13	CPython 3.13	Windows x86-64	Details
flatrtree-1.0.0rc3-cp313-cp313-win32.whl 322.4 kB Sep 1, 2026	CPython 3.13	CPython 3.13	Windows x86-32	Details
flatrtree-1.0.0rc3-cp313-cp313-musllinux_1_2_x86_64.whl 1.9 MB Sep 1, 2026	CPython 3.13	CPython 3.13	Linux musl 1.2+ x86-64	Details
flatrtree-1.0.0rc3-cp313-cp313-musllinux_1_2_aarch64.whl 1.8 MB Sep 1, 2026	CPython 3.13	CPython 3.13	Linux musl 1.2+ ARM64	Details
flatrtree-1.0.0rc3-cp313-cp313-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl 891.4 kB Sep 1, 2026	CPython 3.13	CPython 3.13	Linux glibc 2.28+ x86-64, Linux glibc 2.24+ x86-64	Details
flatrtree-1.0.0rc3-cp313-cp313-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl 866.5 kB Sep 1, 2026	CPython 3.13	CPython 3.13	Linux glibc 2.24+ ARM64, Linux glibc 2.28+ ARM64	Details
flatrtree-1.0.0rc3-cp313-cp313-macosx_11_0_arm64.whl 193.5 kB Sep 1, 2026	CPython 3.13	CPython 3.13	macOS 11.0+ ARM64	Details
flatrtree-1.0.0rc3-cp313-cp313-macosx_10_13_x86_64.whl 195.9 kB Sep 1, 2026	CPython 3.13	CPython 3.13	macOS 10.13+ x86-64	Details
flatrtree-1.0.0rc3-cp312-cp312-win_amd64.whl 335.0 kB Sep 1, 2026	CPython 3.12	CPython 3.12	Windows x86-64	Details
flatrtree-1.0.0rc3-cp312-cp312-win32.whl 323.8 kB Sep 1, 2026	CPython 3.12	CPython 3.12	Windows x86-32	Details
flatrtree-1.0.0rc3-cp312-cp312-musllinux_1_2_x86_64.whl 1.9 MB Sep 1, 2026	CPython 3.12	CPython 3.12	Linux musl 1.2+ x86-64	Details
flatrtree-1.0.0rc3-cp312-cp312-musllinux_1_2_aarch64.whl 1.9 MB Sep 1, 2026	CPython 3.12	CPython 3.12	Linux musl 1.2+ ARM64	Details
flatrtree-1.0.0rc3-cp312-cp312-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl 912.6 kB Sep 1, 2026	CPython 3.12	CPython 3.12	Linux glibc 2.24+ x86-64, Linux glibc 2.28+ x86-64	Details
flatrtree-1.0.0rc3-cp312-cp312-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl 889.8 kB Sep 1, 2026	CPython 3.12	CPython 3.12	Linux glibc 2.24+ ARM64, Linux glibc 2.28+ ARM64	Details
flatrtree-1.0.0rc3-cp312-cp312-macosx_11_0_arm64.whl 196.4 kB Sep 1, 2026	CPython 3.12	CPython 3.12	macOS 11.0+ ARM64	Details
flatrtree-1.0.0rc3-cp312-cp312-macosx_10_13_x86_64.whl 199.0 kB Sep 1, 2026	CPython 3.12	CPython 3.12	macOS 10.13+ x86-64	Details
flatrtree-1.0.0rc3-cp311-cp311-win_amd64.whl 333.6 kB Sep 1, 2026	CPython 3.11	CPython 3.11	Windows x86-64	Details
flatrtree-1.0.0rc3-cp311-cp311-win32.whl 322.9 kB Sep 1, 2026	CPython 3.11	CPython 3.11	Windows x86-32	Details
flatrtree-1.0.0rc3-cp311-cp311-musllinux_1_2_x86_64.whl 1.9 MB Sep 1, 2026	CPython 3.11	CPython 3.11	Linux musl 1.2+ x86-64	Details
flatrtree-1.0.0rc3-cp311-cp311-musllinux_1_2_aarch64.whl 1.8 MB Sep 1, 2026	CPython 3.11	CPython 3.11	Linux musl 1.2+ ARM64	Details
flatrtree-1.0.0rc3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl 881.7 kB Sep 1, 2026	CPython 3.11	CPython 3.11	Linux glibc 2.28+ x86-64, Linux glibc 2.24+ x86-64	Details
flatrtree-1.0.0rc3-cp311-cp311-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl 865.9 kB Sep 1, 2026	CPython 3.11	CPython 3.11	Linux glibc 2.24+ ARM64, Linux glibc 2.28+ ARM64	Details
flatrtree-1.0.0rc3-cp311-cp311-macosx_11_0_arm64.whl 195.6 kB Sep 1, 2026	CPython 3.11	CPython 3.11	macOS 11.0+ ARM64	Details
flatrtree-1.0.0rc3-cp311-cp311-macosx_10_9_x86_64.whl 196.8 kB Sep 1, 2026	CPython 3.11	CPython 3.11	macOS 10.9+ x86-64	Details
flatrtree-1.0.0rc3-cp310-cp310-win_amd64.whl 334.4 kB Sep 1, 2026	CPython 3.10	CPython 3.10	Windows x86-64	Details
flatrtree-1.0.0rc3-cp310-cp310-win32.whl 324.2 kB Sep 1, 2026	CPython 3.10	CPython 3.10	Windows x86-32	Details
flatrtree-1.0.0rc3-cp310-cp310-musllinux_1_2_x86_64.whl 1.9 MB Sep 1, 2026	CPython 3.10	CPython 3.10	Linux musl 1.2+ x86-64	Details
flatrtree-1.0.0rc3-cp310-cp310-musllinux_1_2_aarch64.whl 1.8 MB Sep 1, 2026	CPython 3.10	CPython 3.10	Linux musl 1.2+ ARM64	Details
flatrtree-1.0.0rc3-cp310-cp310-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl 852.4 kB Sep 1, 2026	CPython 3.10	CPython 3.10	Linux glibc 2.28+ x86-64, Linux glibc 2.24+ x86-64	Details
flatrtree-1.0.0rc3-cp310-cp310-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl 836.6 kB Sep 1, 2026	CPython 3.10	CPython 3.10	Linux glibc 2.24+ ARM64, Linux glibc 2.28+ ARM64	Details
flatrtree-1.0.0rc3-cp310-cp310-macosx_11_0_arm64.whl 197.6 kB Sep 1, 2026	CPython 3.10	CPython 3.10	macOS 11.0+ ARM64	Details
flatrtree-1.0.0rc3-cp310-cp310-macosx_10_9_x86_64.whl 198.9 kB Sep 1, 2026	CPython 3.10	CPython 3.10	macOS 10.9+ x86-64	Details
flatrtree-1.0.0rc3-cp39-cp39-win_amd64.whl 331.0 kB Sep 1, 2026	CPython 3.9	CPython 3.9	Windows x86-64	Details
flatrtree-1.0.0rc3-cp39-cp39-win32.whl 321.0 kB Sep 1, 2026	CPython 3.9	CPython 3.9	Windows x86-32	Details
flatrtree-1.0.0rc3-cp39-cp39-musllinux_1_2_x86_64.whl 1.9 MB Sep 1, 2026	CPython 3.9	CPython 3.9	Linux musl 1.2+ x86-64	Details
flatrtree-1.0.0rc3-cp39-cp39-musllinux_1_2_aarch64.whl 1.8 MB Sep 1, 2026	CPython 3.9	CPython 3.9	Linux musl 1.2+ ARM64	Details
flatrtree-1.0.0rc3-cp39-cp39-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl 834.0 kB Sep 1, 2026	CPython 3.9	CPython 3.9	Linux glibc 2.24+ x86-64, Linux glibc 2.28+ x86-64	Details
flatrtree-1.0.0rc3-cp39-cp39-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl 819.0 kB Sep 1, 2026	CPython 3.9	CPython 3.9	Linux glibc 2.24+ ARM64, Linux glibc 2.28+ ARM64	Details
flatrtree-1.0.0rc3-cp39-cp39-macosx_11_0_arm64.whl 190.1 kB Sep 1, 2026	CPython 3.9	CPython 3.9	macOS 11.0+ ARM64	Details
flatrtree-1.0.0rc3-cp39-cp39-macosx_10_9_x86_64.whl 190.7 kB Sep 1, 2026	CPython 3.9	CPython 3.9	macOS 10.9+ x86-64	Details

Total release size:40.1 MB

Release files / flatrtree-1.0.0rc3.tar.gz

Download URL	flatrtree-1.0.0rc3.tar.gz
Size	250.0 kB
Tags	Source
SHA-256 checksum How to use checksums	`11efba5b0b189fc2d284f8badc0511717499e45124807f9389eabf221b3aef8c`
BLAKE2b-256 checksum How to use checksums	`4243af9dfb3c5a668b3c8e1f52e6832a35be59d2438a124181a5773bf56633da`
Upload date	Sep 1, 2026
Uploaded using Trusted Publishing? What is trusted publishing?	Yes
Uploaded via	`twine/7.0.0 CPython/3.13.14`

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Identity

Publishing platform: GitHub Actions
Publishing repository: github.com/flatrtree/flatrtree-py
Publishing commit: github.com/flatrtree/flatrtree-py/tree/5fd73e9f37e7cb0edcd6108302f4c332a9e2668e

Workflow

Publishing configuration: github.com/flatrtree/flatrtree-py/blob/5fd73e9f37e7cb0edcd6108302f4c332a9e2668e/.github/workflows/actions.yml
Publishing logs: github.com/flatrtree/flatrtree-py/actions/runs/33458129589/attempts/1

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Release files / flatrtree-1.0.0rc3-pp311-pypy311_pp73-win_amd64.whl

Download URL	flatrtree-1.0.0rc3-pp311-pypy311_pp73-win_amd64.whl
Size	294.9 kB
Tags	PyPy 3.11 PyPy 3.11 7.3 Windows x86-64
SHA-256 checksum How to use checksums	`d05dc680916abcfe3945c561e6ed520dd71c115d211197f4e2c6c041aaebbac1`
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Upload date	Sep 1, 2026
Uploaded using Trusted Publishing? What is trusted publishing?	Yes
Uploaded via	`twine/7.0.0 CPython/3.13.14`

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Publishing platform: GitHub Actions
Publishing repository: github.com/flatrtree/flatrtree-py
Publishing commit: github.com/flatrtree/flatrtree-py/tree/5fd73e9f37e7cb0edcd6108302f4c332a9e2668e

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Publishing configuration: github.com/flatrtree/flatrtree-py/blob/5fd73e9f37e7cb0edcd6108302f4c332a9e2668e/.github/workflows/actions.yml
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Release files / flatrtree-1.0.0rc3-pp311-pypy311_pp73-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl

Download URL	flatrtree-1.0.0rc3-pp311-pypy311_pp73-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl
Size	112.3 kB
Tags	Linux glibc 2.24+ x86-64 Linux glibc 2.28+ x86-64 PyPy 3.11 PyPy 3.11 7.3
SHA-256 checksum How to use checksums	`ee803a340fe36c6b8a4c93b2ab0ca4691392f98f6962c4e6a7db9d4b46281b09`
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Upload date	Sep 1, 2026
Uploaded using Trusted Publishing? What is trusted publishing?	Yes
Uploaded via	`twine/7.0.0 CPython/3.13.14`

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Publishing platform: GitHub Actions
Publishing repository: github.com/flatrtree/flatrtree-py
Publishing commit: github.com/flatrtree/flatrtree-py/tree/5fd73e9f37e7cb0edcd6108302f4c332a9e2668e

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Release files / flatrtree-1.0.0rc3-pp311-pypy311_pp73-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl

Download URL	flatrtree-1.0.0rc3-pp311-pypy311_pp73-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl
Size	108.9 kB
Tags	Linux glibc 2.24+ ARM64 Linux glibc 2.28+ ARM64 PyPy 3.11 PyPy 3.11 7.3
SHA-256 checksum How to use checksums	`3b726c5f11e6162ed9b72a3307ce53e7aa7629af91b7f18bb05801425540b0c9`
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Publishing platform: GitHub Actions
Publishing repository: github.com/flatrtree/flatrtree-py
Publishing commit: github.com/flatrtree/flatrtree-py/tree/5fd73e9f37e7cb0edcd6108302f4c332a9e2668e

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Publishing configuration: github.com/flatrtree/flatrtree-py/blob/5fd73e9f37e7cb0edcd6108302f4c332a9e2668e/.github/workflows/actions.yml
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Release files / flatrtree-1.0.0rc3-pp311-pypy311_pp73-macosx_11_0_arm64.whl

Download URL	flatrtree-1.0.0rc3-pp311-pypy311_pp73-macosx_11_0_arm64.whl
Size	96.9 kB
Tags	PyPy 3.11 PyPy 3.11 7.3 macOS 11.0+ ARM64
SHA-256 checksum How to use checksums	`f1761095e5ec461e94455a34b2a6371a8f3a9ef41fe591ec14fbe4c7ffa7c4fe`
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Upload date	Sep 1, 2026
Uploaded using Trusted Publishing? What is trusted publishing?	Yes
Uploaded via	`twine/7.0.0 CPython/3.13.14`

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Publishing platform: GitHub Actions
Publishing repository: github.com/flatrtree/flatrtree-py
Publishing commit: github.com/flatrtree/flatrtree-py/tree/5fd73e9f37e7cb0edcd6108302f4c332a9e2668e

Workflow

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1.0.0rc3 This release

Sep 1, 2026 54 release files

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1.0.0rc2

Jan 26, 2023 52 release files

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1.0.0rc1

Jan 26, 2023 52 release files

flatrtree 1.0.0rc3

Flatrtree - Python

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