Parse and query different taxonomic databases
Aims
- Work with taxonomic databases from data dump flatfiles.
- Load them directly into memory for queries and other operations.
- Use same internal data structures and methods for different source DBs.
- Report output as far as possible with DwC terms.
Such functionality is available with the R package
taxadb, but we wish to work in Python
with few dependencies as possible.
Databases supported
- NCBI Taxonomy (names.dmp and nodes.dmp file from taxdump)
- Tested with version 2022-12-01
- GBIF Backbone Taxonomy (Taxon.tsv file from backbone dump)
- Tested with version 2021-11-26
1 maintainer
Metadata
1 maintainer
Release files for flattaxdb 0.1.0
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
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| flattaxdb-0.1.0.tar.gz | 7.4 kB | Without provenance | Details for flattaxdb-0.1.0.tar.gz |
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| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| flattaxdb-0.1.0-py3-none-any.whl | Python 3 | none | any | Details for flattaxdb-0.1.0-py3-none-any.whl |
Total release size: 15.0 kB
Release files / flattaxdb-0.1.0.tar.gz
| Download URL | flattaxdb-0.1.0.tar.gz |
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| Size | 7.4 kB |
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Release files / flattaxdb-0.1.0-py3-none-any.whl
| Download URL | flattaxdb-0.1.0-py3-none-any.whl |
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| Size | 7.5 kB |
| Tags | Python 3 |
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