flowbio

A client for the Flow API. Full documentation is available at https://goodwright.github.io/flowbio/.

    
import flowbio

# NB: this client is being deprecated. Please use the v2 client instead. See the [v2 documentation](https://goodwright.github.io/flowbio/v2/) for details.
client = flowbio.Client()
client.login("your_username", "your_password")

# Upload standard data
data = client.upload_data("/path/to/file.fa", progress=True, retries=5)
print(data)

# Upload sample
sample = client.upload_sample(
    "My Sample Name",
    "/path/to/reads1.fastq.gz",
    "/path/to/reads2.fastq.gz", # optional
    progress=True,
    retries=5,
    metadata={
        "sample_type": "RNA-Seq",
        "scientist": "Charles Darwin",
        "type_specific_metadata": '{"strandedness": "reverse"}',
    }
)
print(sample)

# Upload multiplexed
multiplexed = client.upload_multiplexed(
    "/path/to/reads.fastq.gz",
    progress=True,
    retries=5,
)
print(multiplexed)

# Upload annotation
annotation = client.upload_annotation(
    "/path/to/annotation.csv",
    progress=True,
    retries=5,
)
print(annotation)

# Run pipeline
execution = client.run_pipeline(
    "RNA-Seq",
    "3.8.1",
    "23.04.3",
    params={"param1": "param2"},
    data_params={"fasta": 123456789},
)

Metadata

Release files for flowbio 0.12.0

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for flowbio 0.12.0
File	Size	Uploaded
flowbio-0.12.0.tar.gz	44.3 kB	Aug 18, 2026	Details

Built distribution (wheel)

Table of built distributions (wheels) for flowbio 0.12.0
File	Interpreter	ABI	Platform	Reset
flowbio-0.12.0-py3-none-any.whl 55.3 kB Aug 18, 2026	Python 3	none	any	Details

Total release size: 99.5 kB

Release files / flowbio-0.12.0.tar.gz

Download URL	flowbio-0.12.0.tar.gz
Size	44.3 kB
Tags	Source
SHA-256 checksum How to use checksums	`46bcb2f962676c6647dd5b5c256d1b9db7c61e9fafc8b2f9299e7c15e8ea5580`
BLAKE2b-256 checksum How to use checksums	`72b673fd493460d3baa3a9ef59f5c0e19bae6b993e685afac2f6d6d2c47ddf96`
Upload date	Aug 18, 2026
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/6.2.0 CPython/3.13.1`

Release files / flowbio-0.12.0-py3-none-any.whl

Download URL	flowbio-0.12.0-py3-none-any.whl
Size	55.3 kB
Tags	Python 3
SHA-256 checksum How to use checksums	`2356e940272e74520e4301d7ee9dcfe484e426649f47e4475f066d77e1e33cd6`
BLAKE2b-256 checksum How to use checksums	`24cad091d2b2664ebc45b10e020104342cbc6d2701902bd9d1c442dcaa71ce82`
Upload date	Aug 18, 2026
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/6.2.0 CPython/3.13.1`