flucleave 0.1.2

Deep learning prediction of influenza virus pathogenicity from HA cleavage sites

FluCleave

Deep learning prediction of influenza virus pathogenicity from HA cleavage sites.

Features

• Analyzes hemagglutinin (HA) cleavage site sequences
• Predicts high/low pathogenicity using deep learning
• Handles both DNA and protein sequences
• Command-line interface for easy use
• Trained on curated dataset of known pathogenic sequences

Installation

pip install flucleave

Usage

Predict pathogenicity from FASTA file:

flucleave predict --fasta sequences.fasta --output-dir results/ --prefix sample_name

Train new model (optional):

flucleave train --training-csv data.csv

Data Format

Input FASTA should contain HA protein sequences in either amino acid or DNA format.

License

FluCleave is licensed under the MIT License.