flyeye 0.6

Analysis package for FlyEye Silhouette data.

FlyEye Analysis is part of the NU FlyEye platform for studying gene expression in Drosophila eye imaginal discs. The analysis package helps users analyze data measured using FlyEye Silhouette.

Given one or more .silhouette files, FlyEye Analysis facilitates:

• Dynamic Measurements. Infer expression dynamics from static data

• Data Querying. Select cells by developmental age and cell type

• Dynamic Analysis. Analyze and visualize expression dynamics

• Spatial Analysis. Detect and quantify spatial expression patterns

Please refer to the documentation page for tips on getting started with analyzing your data.

Dependencies

• Python 3.6+

Required:

• Scipy
• Pandas
• Matplotlib

Optional:

• AstroML
• AstroML Addons

Installation

The simplest method is to install via pip:

pip install flyeye

Examples

We've provided a couple tutorial notebooks to help get you started with analyzing your own data. For an example of a complete project utilizing the entire NU FlyEye platform, please refer to our study of Pointed and Yan expression during retinal patterning.

Authors

Amaral Lab