fractal-task-tools 0.4.0

Shared tools for Fractal tasks

Fractal task tools

Fractal-task-tools provides some basic tools for building tasks for the Fractal framework.

Fractal is a framework developed at the BioVisionCenter to process bioimaging data at scale in the OME-Zarr format and prepare the images for interactive visualization.

Get started

$ python -m venv venv

$ source venv/bin/activate

$ python -m pip install -e .
[...]
Successfully installed annotated-types-0.7.0 docstring-parser-0.15 fractal-task-tools-0.0.1 pydantic-2.8.2 pydantic-core-2.20.1 typing-extensions-4.12.2

$ fractal-manifest create --help
usage: fractal-manifest create [-h] --package PACKAGE [--task-list-path TASK_LIST_PATH]

Create new manifest file

options:
  -h, --help            show this help message and exit
  --package PACKAGE     Example: 'fractal_tasks_core'
  --task-list-path TASK_LIST_PATH
                        Dot-separated path to the `task_list.py` module, relative to the package root (default value:
                        'dev.task_list').

Development

$ python -m venv venv

$ source venv/bin/activate

$ python -m pip install -e .[dev]
[...]
Successfully installed asttokens-2.4.1 bumpver-2024.1130 click-8.1.8 colorama-0.4.6 coverage-7.6.12 devtools-0.12.2 exceptiongroup-1.2.2 executing-2.2.0 fractal-task-tools-0.0.1 iniconfig-2.0.0 lexid-2021.1006 packaging-24.2 pluggy-1.5.0 pygments-2.19.1 pytest-8.3.5 six-1.17.0 toml-0.10.2 tomli-2.2.1

$ pre-commit install
pre-commit installed at .git/hooks/pre-commit

How to make a release

From the development environment:

bumpver update --patch --dry

Contributors and license

The Fractal project is developed by the BioVisionCenter at the University of Zurich, who contracts eXact lab s.r.l. for software engineering and development support.

Unless otherwise specified, Fractal components are released under the BSD 3-Clause License, and copyright is with the BioVisionCenter at the University of Zurich.