This release is a pre-release and may not be stable for production use.
Fractal UZH Converters
A collection of Fractal tasks to convert High-Content Screening (HCS) plate data from several microscopes into OME-Zarr format.
Tasks
| Task | Use case |
|---|---|
Convert Operetta Plate to OME-Zarr |
Operetta / Opera Phenix (Revvity) HCS plates. |
Convert Evident ScanR Plate to OME-Zarr |
ScanR (Evident) HCS plates. |
Convert Yokogawa CQ3K Plate to OME-Zarr |
CQ3K (Yokogawa) HCS plates. |
Convert Yokogawa CellVoyager Plate to OME-Zarr |
CellVoyager (Yokogawa) HCS plates. |
Convert MD ImageXpress HCS.ai Plate to OME-Zarr |
ImageXpress HCS.ai (Molecular Devices) HCS plates. |
Convert Custom TIFF HCS Plate to OME-Zarr |
Custom TIFF HCS plates from any source. |
Convert Custom TIFF Images to OME-Zarr |
Custom TIFF single images from any source. |
Each task is a Fractal compound task: an init step parses the microscope metadata and builds the parallelization list, and a compute step writes the image data well-by-well (or image-by-image).
Installation
pip install fractal-uzh-converters
Part of the Fractal OME-Zarr converters ecosystem
This converter is a thin, format-specific layer built on
ome-zarr-converters-tools,
the shared engine that handles tiling, image registration, and OME-Zarr writing for
the whole Fractal converter family. Because they all share that engine, every
converter offers the same options, behavior, and development workflow.
Sibling converters built on the same tooling:
fractal-czi-converters— Zeiss.czifractal-lif-converters— Leica.liffractal-nd2-converters— Nikon.nd2
Documentation
Full documentation — including the supported file layouts, all converter parameters, and the condition-table format — is available at https://fractal-analytics-platform.github.io/fractal-uzh-converters/.
1 maintainer
Metadata
1 maintainer
Release files for fractal-uzh-converters 0.8.0b2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| fractal_uzh_converters-0.8.0b2.tar.gz | 277.7 kB | With provenance | Details for fractal_uzh_converters-0.8.0b2.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| fractal_uzh_converters-0.8.0b2-py3-none-any.whl | Python 3 | none | any | Details for fractal_uzh_converters-0.8.0b2-py3-none-any.whl |
Total release size: 449.6 kB
Release files / fractal_uzh_converters-0.8.0b2.tar.gz
| Download URL | fractal_uzh_converters-0.8.0b2.tar.gz |
|---|---|
| Size | 277.7 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
0bb9e9edd16e0da6ceb02c25127dcf74060638afbbeb1bb6c0fcda7e9daf96b4
|
|
BLAKE2b-256 checksum How to use checksums |
c6725380d332a85e72727170669a0ac082d6ba79d05ad6ba147c6b6ba8291cb5
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/7.0.0 CPython/3.13.14
|
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Oct 20, 2026.
Transparency logRelease files / fractal_uzh_converters-0.8.0b2-py3-none-any.whl
| Download URL | fractal_uzh_converters-0.8.0b2-py3-none-any.whl |
|---|---|
| Size | 171.9 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
d24183f9b0b59677564477ea03ccb45955cf3e25f23d0da1651103c5e860a359
|
|
BLAKE2b-256 checksum How to use checksums |
0a706c80d24e753f4e1ad6ab976028ab2ba509f0684369b4dc6487424036bdf9
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/7.0.0 CPython/3.13.14
|
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Oct 20, 2026.
Transparency logSecurity for fractal-uzh-converters 0.8.0b2
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
Full provenance
All 2 files in this release have been uploaded with provenance metadata.
Attestation for fractal_uzh_converters-0.8.0b2.tar.gz
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Oct 20, 2026.
Transparency logA note on package security
PyPI is a repository for distributing packages, not a service for auditing them. While third-party security researchers and our staff do their best to detect and remove malicious packages, PyPI cannot guarantee the quality, security or suitability of any given package.
To learn more about protecting yourself from malicious actors, visit our package security documentation.
