FractalDNA
Python routines for generating geometric models of DNA
FractalDNA is a Python package to make DNA geometries that can be joined together like jigsaw puzzles. Both simple, sections of DNA and Solenoidal DNA can be built. This module was built to enable DNA-level simulations to be run in Geant4-DNA, part of the Geant4 project.
Structure models define the large scale structure of DNA, seeded from fractals. An example seeding fractal is below:
DNA Models provide straight and curved segments that can come together to make DNA for use in simulations.
Project documentation is available here alongside notebook examples
⚙️ Installation
Install FractalDNA with pip
pip install fractaldna
or install with Poetry
poetry add fractaldna
🧬 Make some DNA
from fractaldna.dna_models import dnachain as dna
# Make a DNA Chain 40 base pairs long (repeating GATC).
chain = dna.DNAChain("GTAC" * 10)
# Export it to a DataFrame for use in another program
df = chain.to_frame()
For more, check out the notebook examples in the project documentation.
🛡 License
This project is licensed under the terms of the MIT license. See LICENSE for more details.
📃 Citation
@misc{fractaldna,
author = {Nathanael Lampe},
title = {FractalDNA},
year = {2021},
publisher = {GitHub},
journal = {GitHub repository},
howpublished = {\url{https://github.com/natl/fractaldna}}
}
Credits 
This project was generated with python-package-template
1 maintainer
Metadata
1 maintainer
Release files for fractaldna 0.7.0
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|---|---|---|---|---|
| fractaldna-0.7.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 89.4 kB
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