FRED tools repository
FRED tools is a collection of python functions for image manipulation and analysis. The basic methods have been developed for analysis of the images produced by the Monte Carlo FRED (www.fred-mc.org) in MetaImage format (*.mha, *.mhd), but they can be applied for images in other formats, e.g. dicom.
Basic Concept
The image in the FRED tools is understood to mean scalar or vector image of any dimension from 2D to 5D. All the images read or processed by the functions are SimpleITK images, and any SinmpleITK routines can be applied. Check SimpleITK filters for available methods of filtering, registration, etc. Because the smallest image dimension supported by SimpleITK is 2D, line profiles, i.e. 1D images are saved as SimpleITK images with the size with only one of the dimension different than one.
Most of the functions have a bool argument displayInfo (default displayInfo=False) which can be used for displaying summary of the function results.
Documentation and tutorial
The documentation of the functions implemented in FRED tools is available at fredtools.ifj.edu.pl or on the GitHub repository.
A simple tutorial has been prepared to help with starting using FRED tools.
Installation
The stable version of FRED tools is available via pip.
For new installation:
$ pip install fredtools
To update existing installation:
$ pip install --upgrade fredtools
The development version is available on GitHub.
$ git clone jasqs/FREDtools
Development
Everyone is invited to support the development of the FRED tools and to add functionalities needed for a specific application. All the new functions or classes should be documented according to numpydoc style. Check numpydoc website for the style guide and examples.
1 maintainer
Metadata
1 maintainer
Release files for fredtools 0.7.28
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| fredtools-0.7.28-py3-none-any.whl | Python 3 | none | any | Details for fredtools-0.7.28-py3-none-any.whl |
Release files / fredtools-0.7.28-py3-none-any.whl
| Download URL | fredtools-0.7.28-py3-none-any.whl |
|---|---|
| Size | 318.3 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
424196b50953f477bd13fe42e8f383d580029295b934459066290888febd72bb
|
|
BLAKE2b-256 checksum How to use checksums |
f5260b96585998af839f79502863c35cb8f32464c1dd212946875f287afec5a9
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.8.0 colorama/0.4.4 importlib-metadata/6.8.0 keyring/23.5.0 pkginfo/1.8.2 readme-renderer/34.0 requests-toolbelt/0.9.1 requests/2.31.0 rfc3986/1.5.0 tqdm/4.57.0 urllib3/1.26.5 CPython/3.10.12
|
Security for fredtools 0.7.28
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
No provenance found
None of the files in this release were uploaded with provenance metadata.
A note on package security
PyPI is a repository for distributing packages, not a service for auditing them. While third-party security researchers and our staff do their best to detect and remove malicious packages, PyPI cannot guarantee the quality, security or suitability of any given package.
To learn more about protecting yourself from malicious actors, visit our package security documentation.
