Browser-based QC for fUSI-BIDS datasets.
Project description
fUSIQC
[!NOTE] fUSIQC explores what a web-based QC app for ConfUSIus could look like. Although it is a proof of concept, it may still be useful if you need to perform quick quality control of a fUSI-BIDS dataset.
Browser-based quality control for fUSI-BIDS datasets, powered by ConfUSIus. Generates QC plots (mean power Doppler, coefficient of variation, carpet plot, DVARS) for each recording and serves a local web app to review and annotate them. QC figures are saved to a derivatives folder for easy inspection, and annotations are persisted to a TSV file for downstream analyses.
Usage
uv run fusiqc /path/to/bids-root
On first run, QC plots are generated for all recordings. Subsequent runs reuse existing
plots and only compute missing ones. Pass --refresh to force regeneration.
Options
| Flag | Default | Description |
|---|---|---|
--output-dir |
<bids_root>/derivatives/fusiqc/ |
QC output directory |
--host |
127.0.0.1 |
Host to bind the web app |
--port |
8765 |
Port to bind the web app |
--workers |
min(8, cpu_count - 1) |
Parallel workers for plot generation |
--refresh |
Force regeneration of all QC plots | |
--no-browser |
Don't open a browser automatically |
Output
<output_dir>/figures/— QC plot PNGs organized by subject/session<output_dir>/quality-control.tsv— QC status and annotations
Release history Release notifications | RSS feed
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