galaxy-tool-util-models

Overview

Pydantic models to support Galaxy tool utilities.

Code: https://github.com/galaxyproject/galaxy/tree/dev/packages/tool_util_models

History

26.1.0 (2026-08-02)

Bug fixes

Fix workflow implicit mapping of flat collections over paired_or_unpaired by @jmchilton in #21933
[26.1 (spiritually)] Fix UDT collection outputs being silently dropped in YAML tool parser by @jmchilton in #22761
Relax legacy doi:-prefixed citation handling (#22795) by @mvdbeek in #22799
Add fixed color set from webcolors package by @guerler in #22869
Always attempt to build tool request for new API endpoint by @mvdbeek in #22894
Accept dce collection references in the tool request model by @mvdbeek in #22926
Make the user-defined tool schema robust for LLM authoring (CustomToolAgent) by @mvdbeek in #22968
Custom-tool agent: verified container resolution + authoring safeguards (with a reusable mulled-recommend CLI) by @mvdbeek in #22981

Enhancements

Various YAML Tool Hardening and Progress toward Tool State Goals by @jmchilton in #21828
Migrate tool execution request from api/tools to api/jobs by @guerler in #21842
Fix tool.parameters initialization by @mvdbeek in #21914
Allow tools to specify time limits by @jmchilton in #21927
Migrate Python packages to `src` layout and pure namespace packages by @mr-c in #21977
Model subcollection mapping (map_over_type) and DCE in tool parameter schema by @jmchilton in #21991
Enrich tool parameter JSON Schema with Galaxy metadata via model methods by @mvdbeek in #22020
More Complete, Robust, and Tested JSON-Schema for Tool State Models by @jmchilton in #22362
Clean up Pydantic v2 deprecation warnings by @mvdbeek in #22463
Clean up various pytest warnings by @mvdbeek in #22472
Narrow YAML schema by @jmchilton in #22507
Tighten the workflow test schema by @jmchilton in #22566
Push UserToolSource semantic validation onto the pydantic model by @mvdbeek in #22615
Lift legacy UserToolSource representations on read by @mvdbeek in #22624
Expose more metadata in ParsedTool abstraction by @jmchilton in #22667

26.0.1 (2026-06-04)

No recorded changes since last release

26.0.0 (2026-04-08)

Bug fixes

Fix Pydantic UnsupportedFieldAttributeWarning for Field defaults in Annotated by @mvdbeek in #21923
Backport paired or unpaired mapping fix by @mvdbeek in #21936
Fix validation of certain classes of text validators in tools. by @jmchilton in #22280

Enhancements

Tool Request API by @jmchilton in #20935
Update fastapi to 0.123.4 and get_openapi() fork by @nsoranzo in #21384
Enable attaching sample sheet to landing requests by @mvdbeek in #21489
Apply 2026 black style by @galaxybot in #21618

Other changes

Merge 25.1 into dev, fix openapi schema generation for TypedDict by @mvdbeek in #21168
Fix tool request API for multiple select parameters with defaults. by @jmchilton in #21416

25.1.2 (2026-03-09)

No recorded changes since last release

25.1.1 (2026-02-03)

No recorded changes since last release

25.1.0 (2025-12-12)

Enhancements

Implement Sample Sheets by @jmchilton in #19305
Prepare ToolBox.dynamic_tool_to_tool() for CWL formats by @nsoranzo in #20364
Type annotation fixes for mypy 1.16.0 by @nsoranzo in #20424
Add configfiles support and various enhancements for user defined tools by @mvdbeek in #20761
Add support for picking from_work_dir directory by @mvdbeek in #20916
Include format in internal json model by @mvdbeek in #20917
Add resource docs and tweak tool source schema title generation by @mvdbeek in #20951
Use workflow-style payload in data landing request by @mvdbeek in #21107

25.0.4 (2025-11-18)

No recorded changes since last release

25.0.3 (2025-09-23)

Bug fixes

Fix collection element sorting in extended_metadata by @mvdbeek in #20928

25.0.2 (2025-08-13)

Bug fixes

Fix parameter models for optional color params. by @jmchilton in #20705

25.0.1 (2025-06-20)

No recorded changes since last release

25.0.0 (2025-06-18)

First release

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