gdellipsoid

Build an ellipsoidal cardiac geometry: tetrahedral mesh, endo/epicardial surfaces, transmural fibers, and a Purkinje network.

Install

pip install gd-ellipsoid

CLI / uvx

Run the whole pipeline or any single step without installing, straight from uvx:

# Full pipeline (generate -> fibers -> purkinje -> plot) into ./out
uvx --from gd-ellipsoid gdellipsoid all --out ./out

# Individual steps
uvx --from gd-ellipsoid gdellipsoid generate --out ./out --h 2.0
uvx --from gd-ellipsoid gdellipsoid fibers   --out ./out --endo-angle 80 --epi-angle -80
uvx --from gd-ellipsoid gdellipsoid purkinje --out ./out
uvx --from gd-ellipsoid gdellipsoid plot     --out ./out

Running gdellipsoid with no subcommand is equivalent to gdellipsoid all. The output directory defaults to ./out and is created on demand. See gdellipsoid --help for all commands and options.

Docs

See docs for the API and more details.