a Python Wrapper for the Gemma API
Project description
This is a Python wrapper for Gemma’s RESTful API. Gemma is a web site, database and a set of tools for the meta-analysis, re-use and sharing of genomics data, currently primarily targeted at the analysis of gene expression profiles. Gemma contains data from thousands of public studies, referencing thousands of published papers.
Installation instructions
The package requires Python3.10+.
Install it from a local copy
git clone git@github.com:PavlidisLab/gemmapy.git cd gemmapy pip install .Install it from PyPI
pip install gemmapy
Usage
To get started with gemmapy, read the Tutorial.
The full documentation can be found at https://pavlidislab.github.io/gemmapy/.
Citation
To cite Gemma, please use: Lim, N. et al., Curation of over 10 000 transcriptomic studies to enable data reuse, Database, 2021.
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file gemmapy-2.0.3.tar.gz.
File metadata
- Download URL: gemmapy-2.0.3.tar.gz
- Upload date:
- Size: 122.6 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.1.0 CPython/3.13.3
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
feddd3e3244e73603ab8930105852178f78f328ddde37622054c051e1af012b1
|
|
| MD5 |
e256ece7c3a928030707f7142d7190ca
|
|
| BLAKE2b-256 |
e626d39c8767beb02de02b490b5c064ff082c2e51ec8bccd1f2de748142b545f
|
File details
Details for the file gemmapy-2.0.3-py3-none-any.whl.
File metadata
- Download URL: gemmapy-2.0.3-py3-none-any.whl
- Upload date:
- Size: 381.2 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.1.0 CPython/3.13.3
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
6f7b6b092b3e3c23653f899b72e01eee770040d7970510b548d0d8127c8c8538
|
|
| MD5 |
9d628c24b8f5f0b23a04a0e984449878
|
|
| BLAKE2b-256 |
c1e1464e368d8d53e080a5edf53791a066bd9d61ee477785d131687d3988039b
|
