gene-id-resolver 0.1.0

Production-grade gene ID conversion tool with comprehensive deprecated gene support

gene-id-resolver

The definitive gene ID conversion tool for reproducible bioinformatics

Born from the frustration of inconsistent gene mappings in multi-omics research

Features

• 🔄 Reproducible conversions - version-controlled gene annotations
• 🕵️ Ambiguity intelligence - don't silently drop problematic genes
• 📊 Complete audit trails - know exactly why each conversion succeeded/failed
• 💾 Offline-first - no API limits, no network dependencies

Quick Start

pip install gene-id-resolver

from gene_id_resolver import Resolver

resolver = Resolver(genome_build="hg38", annotation_version="109")
result = resolver.convert(["MEF2C", "BRCA1"], from_type="symbol", to_type="ensembl")
print(result.audit_report)  


For Researchers
This tool solves the critical problem of gene identifier inconsistencies that plague reproducible bioinformatics analysis.

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## 🔧 **GIT INITIALIZATION - PROPER VERSION CONTROL**

```bash
# Initialize Git
git init

# Add everything except ignored files
git add .

# Professional first commit
git commit -m "feat: initial project structure

- Modern pyproject.toml configuration
- Bioinformatics-optimized .gitignore
- Modular package structure
- Core dependencies for data engineering phase"