genesis-os 1.0.6

Self-reflecting OS framework with live cosmic-web emergence simulation, Dash GUI, real-time phase transitions, and resonance coupling for GenesisAeon

genesis-os

Self-reflecting OS framework with live cosmic-web emergence simulation, Dash GUI,
real-time phase transitions, and resonance coupling for GenesisAeon.

---

Overview

genesis-os v1.0.6 is a unified Python framework implementing the GenesisAeon architecture: a self-reflecting, entropy-governed, phase-transitioning system described by the Unified Lagrangian formalism. It integrates CREP (Coherence-Resonance-Emergence-Poetics) evaluation, a UTAC-Logistic entropy ODE, live cosmic-web emergence simulation via CosmicWebSimulator, a real-time Dash web GUI, Mandala visualisation, and sonification.

v1.0.0 was the ecosystem milestone release: all 40 domain packages (P17–P40) reach production-stable status, spanning the full CREP criticality spectrum from astrophysics (Γ ≈ 0.014) to network science (Γ ≈ 0.443). v1.0.6 pins cosmic-web>=1.0.1 (full-stack GenesisOS import fix); v1.0.5 fixes Zenodo version sync (parse_release_tag, sync_zenodo_version.py); v1.0.4 adds Diamond contract CI; v1.0.3 fixes AgentMemory FIFO eviction and Mandala plugin test isolation; v1.0.2 pins diamond-setup>=2.1.0; v1.0.1 synchronised the [full-stack] extra to 48 GenesisAeon ecosystem packages on PyPI (correct distribution names, floor pins >=1.0.0) — no API or logic changes.

unified-mandala Integration — Phases A–H

Phase	Module	Feature
A	core/crep_engine.py	Canonical CREP Engine (Γ-weighted, TypeScript bridge)
B	core/utac_stoch_bridge.py	SDE/Stochastic UTAC Bridge (Euler–Maruyama + JAX)
C	afet/	AFET + Landauer Consistency (thermodynamic KI-energy bounds)
D	mirror/	Mirror Machine (Tension Metric, DualDetector, 87.2× damping)
E	sigillin/	Sigillin & Ritual Hooks (symbolic trigger generation)
F	runtime/fraktalrun_engine.py	FraktalRun Engine (fractal phase-space, Lyapunov exponent)
G	runtime/nats_publisher.py + monitoring/	Live NATS streaming + Prometheus /metrics
H	governance/	EthicsGate circuit-breaker + OPA Bridge + PersonhoodLevel

The Unified Lagrangian

L = T - V + Phi(H) + Gamma(C, R, E, P)

where:

• T = (1/2) * kappa * R^2 — kinetic resonance-coupling energy
• V = (1/2) * eta * H^2 — entropic resistance potential
• Phi(H) = phi0 * ln(1 + H) — self-reflection potential
• Gamma(C,R,E,P) = (C * R * E * P)^(1/4) — CREP coupling term (geometric mean; any zero component yields Γ=0)

UTAC-Logistic Entropy Evolution

dH/dt = r * H * (1 - H/K) * tanh(sigma * Gamma)

Self-Reflection Update

Phi_{n+1}(H) = Phi_n(H) * (1 + alpha * grad_H L)

where alpha is the reflection learning rate and grad_H L is approximated from the L2 norm of the CREP gradient vector.

---

Installation

# Core package
pip install genesis-os

# Core + live Dash web GUI
pip install "genesis-os[gui]"

# Full stack with all optional packages + GUI
pip install "genesis-os[full-stack,gui]"

# Development mode
pip install "genesis-os[dev]"

Extra Packages

[gui] — Live Dash Web Dashboard

pip install "genesis-os[gui]" installs:

Package	Version	Purpose
dash	>=2.14.0	Reactive web framework
dash-bootstrap-components	>=1.5.0	Bootstrap theming
plotly	>=5.15.0	Interactive charts (CREP radar, H/L/emergence)

[full-stack] — GenesisAeon Ecosystem (48 packages)

pip install "genesis-os[full-stack]" installs 48 optional GenesisAeon packages (all pinned >=1.0.0 unless noted), including:

Category	Packages (examples)
Core adapters	aeon-ai, utac-core, sigillin, mirror-machine, entropy-governance
Simulation	cosmic-web, universums-sim, cosmic-moment, feldtheorie, fieldtheory
UTAC domain (P17–P38)	amoc-utac, sandpile-utac, neural-avalanche-utac, hikari-ledger, diffusive-routing, …
Governance / Q4	genesis-scope, genesis-q4-core, worldview, gemeinwohl
Visualisation	mandala-visualizer, unified-mandala, climate-dashboard
Infrastructure	diamond-setup, entropy-table (>=2.0.1), genesisaeon-hexaagent

Full list: see [project.optional-dependencies] full-stack in pyproject.toml. Audio output uses the separate [audio] extra (genesisaeon-sonification).

---

Quick Start

from genesis_os import GenesisOS
from genesis_os.core.orchestrator import GenesisConfig

# Create configuration
config = GenesisConfig(
    entropy=0.4,
    alpha=0.1,        # self-reflection learning rate
    max_cycles=50,
    transition_threshold=0.6,
    seed=42,
)

# Instantiate and run
genesis = GenesisOS(config=config)
final_state = genesis.run()

print(f"Phase: {final_state.phase.value}")
print(f"Entropy: {final_state.entropy:.4f}")
print(f"Phi(H): {final_state.phi:.4f}")
print(f"Lagrangian: {final_state.lagrangian:.4f}")
print(f"Transitions: {len(final_state.transitions)}")
print(f"Emergence Events: {len(final_state.emergence_events)}")

Live Cosmic-Web Emergence Simulation (v0.2.0)

from genesis_os import CosmicWebSimulator, GenesisOS
from genesis_os.core.orchestrator import GenesisConfig

config = GenesisConfig(entropy=0.4, max_cycles=50, seed=42)
genesis = GenesisOS(config=config, emergence_threshold=0.3)

for state in genesis.phase_transition_loop():
    summary = state.metadata.get("emergence_summary", {})
    if state.emergence_events:
        last = state.emergence_events[-1]
        print(
            f"Cycle {state.cycle}: EmergenceEvent "
            f"nodes={last.node_count} rate={last.emergence_rate:.4f} "
            f"density={summary.get('mean_density', 0.0):.3f}"
        )

Real-Time Dash Web GUI (v0.2.0)

# Install GUI extra
pip install "genesis-os[gui]"

# Launch live dashboard at http://127.0.0.1:8050
genesis-os cycle --entropy 0.4 --max-cycles 200 --gui

# Custom port
genesis-os cycle --gui --gui-port 8080 --max-cycles 500

# Programmatic GUI usage
from genesis_os import GenesisOS
from genesis_os.core.orchestrator import GenesisConfig
from genesis_os.dashboard.web_gui import GenesisWebGUI, GUISnapshot
import threading

config = GenesisConfig(entropy=0.4, max_cycles=200, seed=7)
genesis = GenesisOS(config=config)
gui = GenesisWebGUI(interval_ms=500)
gui.build_app()

# Run GUI in background
t = threading.Thread(target=lambda: gui.run(host="127.0.0.1", port=8050), daemon=True)
t.start()

for state in genesis.phase_transition_loop():
    esummary = state.metadata.get("emergence_summary", {})
    gui.push_snapshot(GUISnapshot(
        cycle=state.cycle,
        phase=state.phase.value,
        entropy=state.entropy,
        phi=state.phi,
        lagrangian=state.lagrangian,
        gamma=state.crep.gamma if state.crep else 0.0,
        mean_density=float(esummary.get("mean_density", 0.0)),
        active_nodes=int(esummary.get("active_nodes", 0)),
        emergence_events=len(state.emergence_events),
    ))

Real-Time Loop with Mandala

from genesis_os import GenesisOS
from genesis_os.core.orchestrator import GenesisConfig
from genesis_os.dashboard.mandala import MandalaDashboard

config = GenesisConfig(entropy=0.5, max_cycles=20, seed=7)
genesis = GenesisOS(config=config)
dashboard = MandalaDashboard()

for state in genesis.phase_transition_loop():
    if state.crep:
        print(dashboard.render_ascii(state.crep, state.phase, state.cycle))

Sonification

from genesis_os import GenesisOS
from genesis_os.core.orchestrator import GenesisConfig
from genesis_os.dashboard.sonification import Sonifier

config = GenesisConfig(max_cycles=10, seed=1)
genesis = GenesisOS(config=config)
sonifier = Sonifier()

for state in genesis.phase_transition_loop():
    if state.crep:
        frame = sonifier.crep_to_frequencies(state.crep, state.cycle)
        print(f"Cycle {state.cycle}: C={frame.frequencies['C']:.1f} Hz")

Canonical CREP + Mandala Bridge (v0.4.0)

from genesis_os import GenesisOS
from genesis_os.core.orchestrator import GenesisConfig
from genesis_os.core.crep_engine import CanonicalCREPEngine
from genesis_os.dashboard.mandala import MandalaDashboard

config = GenesisConfig(entropy=0.5, max_cycles=30, seed=42)
genesis = GenesisOS(config=config)
crep_engine = CanonicalCREPEngine()
mandala = MandalaDashboard()

for state in genesis.phase_transition_loop():
    if state.crep:
        # Canonical Γ with Gaussian coherence weighting
        canonical = crep_engine.evaluate(state.crep)
        tension = float(state.metadata.get("tension", 0.0))
        print(
            f"Cycle {state.cycle:3d} | "
            f"Γ_canonical={canonical.gamma:.4f} | "
            f"Tension={tension:.3f} | "
            f"Phase={state.phase.value}"
        )
        print(mandala.render_ascii(state.crep, state.phase, state.cycle))

EthicsGate + Tension Circuit-Breaker (v0.4.0)

from genesis_os import GenesisOS
from genesis_os.core.orchestrator import GenesisConfig

# EthicsGate enabled by default; halts cycles when tension > 5.0
config = GenesisConfig(
    entropy=0.6,
    max_cycles=100,
    ethics_gate_enabled=True,
    tension_threshold=5.0,   # Tension(t) = Γ_Klima · Q_KI / (V_Eis + ε)
    min_personhood_level=1,  # Require at least REACTIVE level
    seed=7,
)
genesis = GenesisOS(config=config)

for state in genesis.phase_transition_loop():
    tension = state.metadata.get("tension", 0.0)
    print(f"Cycle {state.cycle}: tension={tension:.3f}")
# Loop stops automatically if EthicsGate triggers

---

CLI

# Run a cycle with real-time output + emergence events
genesis-os cycle --entropy 0.4 --max-cycles 50 --phases

# Headless simulation, JSON output (includes emergence_events + emergence_summary)
genesis-os cycle --simulate --entropy 0.3 --max-cycles 100 --seed 42

# Launch live Dash GUI at http://127.0.0.1:8050
genesis-os cycle --gui --entropy 0.4 --max-cycles 200

# GUI on custom port
genesis-os cycle --gui --gui-port 8080 --max-cycles 500

# With visualisation and sonification (requires [full-stack])
genesis-os cycle --visualize --sonify --max-cycles 20

# List phase information
genesis-os phases

# System info
genesis-os info

CLI Reference

Option	Default	Description
--entropy FLOAT	0.5	Initial entropy H in [0,1]
--max-cycles INT	20	Number of orchestration cycles
--alpha FLOAT	0.1	Self-reflection learning rate alpha
--seed INT	None	Random seed for reproducibility
--phases	False	Print phase transitions + emergence events
--simulate	False	Headless mode, JSON output
--visualize	False	Render Mandala dashboard
--sonify	False	Generate sonification output
--gui	False	Launch live Dash web GUI (requires [gui])
--gui-port INT	8050	Dash server port
--gui-host STR	127.0.0.1	Dash server host

---

Architecture

genesis-os/
├── src/genesis_os/
│   ├── core/
│   │   ├── crep.py               # CREPEvaluator, CREPScore
│   │   ├── crep_engine.py        # CanonicalCREPEngine (Phase A)
│   │   ├── utac_stoch_bridge.py  # SDE/JAX bridge (Phase B)
│   │   ├── phase.py              # Phase, PhaseMatrix, PhaseTransition
│   │   └── orchestrator.py       # GenesisOS orchestrator
│   ├── afet/                     # AFET + Landauer thermodynamics (Phase C)
│   ├── mirror/
│   │   ├── tension_metric.py     # Tension(t) = Γ·Q_KI/(V_Eis+ε) (Phase D)
│   │   └── dual_detector.py      # Collapse + regeneration detector
│   ├── sigillin/                 # Symbolic trigger generation (Phase E)
│   ├── runtime/
│   │   ├── engine.py             # RuntimeEngine (Unified Lagrangian)
│   │   ├── utac.py               # UTACLogistic ODE
│   │   ├── emergence.py          # CosmicWebSimulator
│   │   ├── fraktalrun_engine.py  # Fractal phase-space exploration (Phase F)
│   │   └── nats_publisher.py     # Async NATS streaming (Phase G)
│   ├── monitoring/
│   │   └── prometheus_exporter.py  # /metrics endpoint (Phase G)
│   ├── governance/
│   │   ├── ethics_gate.py        # EthicsGate circuit-breaker (Phase H)
│   │   ├── opa_bridge.py         # OPA policy bridge (Phase H)
│   │   └── personhood.py         # PersonhoodLevel CREP assessment
│   ├── dashboard/
│   │   ├── mandala.py            # MandalaDashboard
│   │   ├── sonification.py       # Sonifier
│   │   └── web_gui.py            # Dash live dashboard
│   └── plugins/
│       ├── registry.py           # PluginRegistry
│       └── adapters/             # One adapter per optional package

---

Development

git clone https://github.com/GenesisAeon/genesis-os.git
cd genesis-os
pip install -e ".[dev]"

# Run tests
pytest

# Lint
ruff check src tests

# Type check
mypy src

# Build docs
mkdocs serve

---

Citation

If you use genesis-os in academic work, please cite:

Paper (V2 — peer-review expanded):

@article{roemer2026genesisaeon_v2,
  author       = {Römer, Johann},
  title        = {{GenesisAeon v0.3.1}: A Unified Variational Framework
                  for Emergent Criticality Across Physical Domains},
  journal      = {Zenodo},
  year         = {2026},
  month        = apr,
  version      = {v2},
  publisher    = {Zenodo},
  doi          = {10.5281/zenodo.19645351},
  url          = {https://doi.org/10.5281/zenodo.19645351}
}

Software:

@software{roemer2026genesisaeon_software,
  author       = {Römer, Johann},
  title        = {{genesis-os}: GenesisAeon Unified Framework — Python Implementation},
  year         = {2026},
  publisher    = {Zenodo},
  version      = {v1.0.6},
  doi          = {10.5281/zenodo.19645351},
  url          = {https://doi.org/10.5281/zenodo.19645351}
}

Full bibliography (25 BibTeX entries including Bak, Pikovsky, GENERIC, ERA5, GADGET-4, IllustrisTNG, IPCC AR6): → docs/genesisaeon_citations.bib

Paper PDF: docs/genesisaeon_v0.3.1_paper.pdf

APA: Römer, J. (2026, April). GenesisAeon v0.3.1: A unified variational framework for emergent criticality across physical domains (v2). Zenodo. https://doi.org/10.5281/zenodo.19645351

---

License

• Code: GNU General Public License v3 or later (GPLv3+)
• Documentation: Creative Commons Attribution 4.0 International (CC BY 4.0)

The dual-licence model allows free academic use and redistribution under GPLv3 while ensuring documentation and scientific content remain openly citable under CC BY 4.0. See LICENSE for the full GPLv3 text.

"A system that listens - a pattern that lives." Im Kreis der Genesis erwacht das Mandala.