Geneweaver DB
The Geneweaver DB library provides database access functionality for the Geneweaver project. The library contains SQL queries wrapped in standard python functions, as well as a database connection manager.
Installation
To install the Geneweaver DB library, run one of the following commands:
Using Pip
pip install geneweaver-db
Using Poetry
poetry add geneweaver-db
Usage
The Geneweaver DB library is intended to be used as a dependency for other Geneweaver packages, but can also be used as a stand-alone pacakge.
The package has three main sections:
geneweaver.db- contains non-async database functions.geneweaver.db.aio- contains async database functions.geneweaver.db.query- contains SQL queries and SQL generation functions.
Database functions usually take a Cursor or AsyncCursor object as their first
argument.
Non-Async Functions
import psycopg
import geneweaver
from geneweaver.db.core.settings import settings
def get_my_gene():
with psycopg.connect(settings.URI) as conn:
with conn.cursor() as cur:
result = geneweaver.db.gene.get(cur, 'my_gene')
return result
Async Functions
import psycopg
import geneweaver
from geneweaver.db.core.settings import settings
async def get_my_gene():
async with psycopg.AsyncConnection.connect(settings.URI) as conn:
async with conn.cursor() as cur:
result = await geneweaver.db.aio.gene.get(cur, 'my_gene')
return result
1 maintainer
Metadata
1 maintainer
Release files for geneweaver-db 0.5.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| geneweaver_db-0.5.0.tar.gz | 34.4 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| geneweaver_db-0.5.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 87.5 kB
Release files / geneweaver_db-0.5.0.tar.gz
| Download URL | geneweaver_db-0.5.0.tar.gz |
|---|---|
| Size | 34.4 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
170ee8fdc7efe5f3a6989014db0b6e2c02d9da3ff8b085ca218168f3cfcc8d21
|
|
BLAKE2b-256 checksum How to use checksums |
4a2214e4f1d353b0a288eb928081ac6981e57067f5d3b2c6329194dab16d7c2e
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
poetry/1.8.3 CPython/3.9.20 Linux/6.8.0-1014-azure
|
Release files / geneweaver_db-0.5.0-py3-none-any.whl
| Download URL | geneweaver_db-0.5.0-py3-none-any.whl |
|---|---|
| Size | 53.1 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
7bb40b7a50783a48092ddf6529aca70c49bfb69da6e52420076cc300769db297
|
|
BLAKE2b-256 checksum How to use checksums |
1db4a4b5dce17f225c64f6309a038627848c5593a294a90c4a846728b581436f
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
poetry/1.8.3 CPython/3.9.20 Linux/6.8.0-1014-azure
|
