geniepy 0.16

Gene-Disease relationship trend detection

Gene-Disease relationship trend detection application.

Note

Python package available on PyPi

Project documentation here

Installation

Install with pip

Install from PyPi with pip

pip install geniepy

Install from source code

Install using setuptools locally

git clone https://github.com/derekkinzo/genie.git
cd genie/geniepy
python setup.py install

Run Source Code

Create virtual environment, and run code

python3 -m venv .venv
source .venv/bin/activate (for windows: source .venv/scripts/activate)
pip install -r requirements.txt

Python Package Development

Setuptools commands to test, generate docs, and install for development (creates symlink)

python setup.py test
python setup.py docs
python setup.py develop

Generate Python Package

Commands to generate python package and upload it to PyPi (setup PyPi account and .profile first)

git tag -a {version}
python setup.py sdist bdist_wheel
twine upload --repository testpypi dist/{package name}
twine upload dist/{package name}