genome-atlas
A unified knowledge graph and embedding space for programmable genome-writing enzymes — CRISPR, CAST, bridge recombinases, Fanzor, and more — with cross-system selection decision support.
Part of the PEN-STACK infrastructure for non-destructive genome engineering.
Install
pip install genome-atlas
Quickstart
from genome_atlas import Atlas
atlas = Atlas.load()
recs = atlas.select_editor(
cell_type="HEK293T",
edit_type="insertion",
cargo_size_bp=1500,
delivery="AAV",
top_k=5,
)
for r in recs:
print(r.system, r.pen_score, r.aav_fit)
Citation
See CITATION.cff or cite the preprint:
Ahmed, A. (2026). GENOME-ATLAS: A unified knowledge graph for programmable genome-writing enzymes. bioRxiv.
License
MIT — see LICENSE.
1 maintainer
Release files for genome-atlas 0.0.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| genome_atlas-0.0.2.tar.gz | 6.1 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| genome_atlas-0.0.2-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 10.5 kB
Release files / genome_atlas-0.0.2.tar.gz
| Download URL | genome_atlas-0.0.2.tar.gz |
|---|---|
| Size | 6.1 kB |
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| Download URL | genome_atlas-0.0.2-py3-none-any.whl |
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| Size | 4.4 kB |
| Tags | Python 3 |
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