A genome browser in your Jupyter notebook
Project description
GenomeNotebook (1.0.0)
A genome browser in your Jupyter notebook
Install
pip install genomenotebook
Upgrade
New versions of genomenotebook are released on a regular basis. Make sure to upgrade your installation to enjoy all the features.
pip install genomenotebook --upgrade
How to use
Create a simple genome browser with a search bar. The sequence appears when zooming in.
Tracks can be added to visualize your favorite genomics data. See Examples for more !!!!
import genomenotebook as gn
g=gn.GenomeBrowser(gff_path=gff_path, fasta_path=fasta_path, init_pos=10000, bounds=(0,100000))
g.show()
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