geoenrich 1.0.1
Acknowledgment
This project is being developed as part of the G2OI project, cofinanced by the European Union, the Reunion region, and the French Republic.
Package description
GeoEnrich provides functionalities to enrich georeferenced events (such as species occurrences) with environmental data from satellites or models. Users can specify a geographic or temporal buffer to include data in the neighbourhood of occurrences into their analyses. Two main outputs are available: a simple summary of the variable in the requested area, or the full data (as a geotiff raster, a png image, or a numpy array).
Sea surface temperature, chlorophyll, and 40 other environmental variables are available natively, and others can easily be added by the user. This package is intended for large numbers of occurrences: local storage is implemented to avoid redundant requests to remote servers.
The package provides functions to retrieve occurrence data directly from GBIF, or open a custom dataset from any source. Arbitrary areas defined by the user can also be enriched.
Documentation on Read the Docs.
Installation
Installation instructions are in the documentation, for python and R.
Using the package
Jupyter Notebook tutorials are available for python and R.
Using the graphic interface
A graphic interface is available through a Docker web app. See instructions here
How to cite
As this package is distributed under a GPLv3 license, you have no obligation to cite the authors when you use it. If you want to cite the package to ensure reproducibility, please consider doing it the following way:
Morand, G., Nabil, T., Poulain, S., Barde, J. & Mouillot, D. (2026). GeoEnrich v1.0.1: a new tool for scientists to painlessly enrich species occurrence data with environmental variables (v1.0.1). Zenodo. http://doi.org/10.5281/zenodo.6458090
You can find the specific DOI for the version you are using on the package's Zenodo page.
Issues and further developments
User suggestions
Please feel free to raise issues or suggest improvements in the Issues tab.
Planned improvements
- Enrich an area defined by a shapefile.
1 maintainer
Metadata
1 maintainer
Release files for geoenrich 1.0.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| geoenrich-1.0.1.tar.gz | 397.7 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| geoenrich-1.0.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 795.4 kB
Release files / geoenrich-1.0.1.tar.gz
| Download URL | geoenrich-1.0.1.tar.gz |
|---|---|
| Size | 397.7 kB |
| Tags | Source |
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Release files / geoenrich-1.0.1-py3-none-any.whl
| Download URL | geoenrich-1.0.1-py3-none-any.whl |
|---|---|
| Size | 397.7 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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