gibbus
Flexible maximum-likelihood modeling of smooth univariate log-concave distributions.
gibbus fits explicit, support-aware analytic probability distributions to point or interval-censored data without requiring a fixed named family such as Normal or Gamma. A fitted Distribution represents a Gibbus distribution. A single component is log-concave and therefore unimodal; finite mixtures extend the model to multimodal data.
Unlike a histogram, KDE, spline, or piecewise-linear log-density, a fitted Gibbus distribution has an explicit analytic density and negative-log density on the interior of its support. The model is fit by maximum likelihood under a global convexity constraint on the negative-log density, and the fitted object exposes density, CDF, quantile, moment, sampling, survival, diagnostic, and transformation operations through one distributional interface.
Why Gibbus?
- No fixed named family required. Log-concavity is the primary per-component shape assumption, with progressively richer smooth potentials available through polynomial degree.
- Support-aware modeling. Full-line, half-line, and bounded supports use representations adapted to their geometry rather than post-hoc clipping.
- Point and interval-censored observations. Interval observations contribute their probability masses directly rather than midpoint substitutions.
- Optional mixtures. The default fit is a single log-concave component; explicit or automatically selected finite mixtures support multimodal data.
- Full distributional interface. Evaluate densities, probabilities, quantiles, moments, samples, survival quantities, information measures, and diagnostics from the fitted model.
- Tail-aware numerics. Extreme-tail probabilities and quantiles use dedicated log-domain and direct-tail machinery instead of numerically fragile
1 - cdf(x)calculations. - Exponential-family perspective. For fixed support, boundary structure, and polynomial degree, the natural coefficients form an exponential-family representation, linking maximum-likelihood fitting to moment-matching and maximum-entropy geometry under the convexity constraint.
- Versioned persistence. Fitted models have a non-pickle NumPy serialization format with an explicit cross-version compatibility contract.
- Compiled numerical kernels. Performance-sensitive fitting, quadrature, certification, and spectral evaluation routines are implemented in Cython.
See Modeling concepts for the statistical model and its relationship to fixed parametric families and nonparametric density estimators.
Installation
For a published release, install from PyPI:
python -m pip install gibbus
Gibbus 0.1.x is tested on CPython 3.10 through 3.14. Release wheels are intended to cover the supported Linux, Windows, and macOS targets, so a compiler is not required when pip selects a compatible wheel.
For a source checkout:
git clone https://github.com/DanJSal/gibbus.git
cd gibbus
python -m pip install .
Source builds compile the Cython extensions and therefore require a C compiler and Python development headers. For editable development installation and build details, see Development.
Quick start
import numpy as np
from gibbus import Distribution
rng = np.random.default_rng(0)
samples = rng.normal(size=500)
c = Distribution().fit(samples, support=(-np.inf, np.inf))
c.mean, c.std, c.mode, c.median
c.pdf([-1.0, 0.0, 1.0])
c.cdf(0.0)
c.ppf(0.25)
c.sample(100, rng=rng)
The default is a single log-concave component. For multimodal data, specify a component count or opt into automatic selection:
bimodal = np.concatenate(
[rng.normal(-2, 0.5, 300), rng.normal(2, 0.5, 300)]
)
c2 = Distribution().fit(
bimodal,
n_components="auto",
support=(-np.inf, np.inf),
)
c2.n_components
c2.weights
c2.modes
Automatic component selection is a staged KDE/BIC search rather than an exhaustive or globally certified search. See Fitting for the selection policy and fit options.
Documentation
The documentation is organized by task and subject rather than kept in one large README:
- Documentation index
- Getting started
- Modeling concepts
- Fitting
- Using fitted distributions
- Serialization and compatibility
- Diagnostics and model checking
- API reference
- Examples
- Numerical methods and performance
- Limitations and concurrency
- Development
Compatibility and versioning
The 0.x series is pre-1.0: documented public APIs are intended to remain usable within a release line, but minor releases may still refine the public surface as the project matures. Patch releases are reserved for compatible fixes and maintenance changes.
Durable serialized models use their own explicit format version and compatibility contract; package version numbers do not silently reinterpret an older serialization format. See Serialization and compatibility.
Free-threaded CPython builds are not currently supported or tested.
Public API
The supported top-level API consists of:
from gibbus import Distribution, suppressed_failures, clear_suppressed_failures
Distribution is the fitted-model interface. The two module-level helper functions expose numerical fallbacks that were suppressed during graceful degradation. Other package names are implementation details unless documented otherwise.
Contributing and citation
Contribution guidance is in CONTRIBUTING.md. Release history is tracked in CHANGELOG.md.
For research use, citation metadata is provided in CITATION.cff.
License
gibbus is distributed under the MIT License. See LICENSE for the full terms.
Metadata
Release files for gibbus 0.1.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
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|---|---|---|---|
| gibbus-0.1.0.tar.gz | 644.1 kB | Details |
Built distributions (wheels)
Total release size: 76.1 MB
Release files / gibbus-0.1.0.tar.gz
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| Tags | CPython 3.10 Windows x86-64 |
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twine/7.0.0 CPython/3.13.14
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Transparency logRelease files / gibbus-0.1.0-cp310-cp310-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl
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| Size | 9.4 MB |
| Tags | CPython 3.10 Linux glibc 2.17+ x86-64 Linux glibc 2.28+ x86-64 |
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twine/7.0.0 CPython/3.13.14
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Transparency logRelease files / gibbus-0.1.0-cp310-cp310-macosx_11_0_arm64.whl
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| Size | 1.8 MB |
| Tags | CPython 3.10 macOS 11.0+ ARM64 |
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Transparency logRelease files / gibbus-0.1.0-cp310-cp310-macosx_10_9_x86_64.whl
| Download URL | gibbus-0.1.0-cp310-cp310-macosx_10_9_x86_64.whl |
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| Size | 2.0 MB |
| Tags | CPython 3.10 macOS 10.9+ x86-64 |
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twine/7.0.0 CPython/3.13.14
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