GO CAM Data Model (Python)

These details have not been verified by PyPI

Project description

gocam

GO CAM Data Model (Python)

Website

https://geneontology.github.io/gocam-py

About

Example yaml/json

id: gomodel:568b0f9600000284
title: Antibacterial innate immune response in the intestine via MAPK cascade (C.
  elegans)
taxon: NCBITaxon:6239
status: production
comments:
- 'Automated change 2023-03-16: RO:0002212 replaced by RO:0002630'
- 'Automated change 2023-03-16: RO:0002213 replaced by RO:0002629'
activities:
- id: gomodel:568b0f9600000284/57ec3a7e00000079
  enabled_by: WB:WBGene00006575
  molecular_function:
    evidence:
    - term: ECO:0000314
      reference: PMID:15625192
      provenances:
      - contributor: https://orcid.org/0000-0002-1706-4196
        date: '2019-09-23'
    provenances: []
    term: GO:0035591
  occurs_in:
    evidence:
    - term: ECO:0000314
      reference: PMID:15625192
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2019-06-28'
    term: GO:0005737
  part_of:
    evidence:
    - term: ECO:0000315
      reference: PMID:19837372
      with_objects:
      - WB:WBVar00241222|WB:WBVar00241223
      provenances:
      - contributor: https://orcid.org/0000-0002-1706-4196
        date: '2021-07-08'
    term: GO:0140367
  causal_associations:
  - evidence:
    - term: ECO:0000315
      reference: PMID:15123841
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2019-05-31'
    predicate: RO:0002629
    downstream_activity: gomodel:568b0f9600000284/57ec3a7e00000109
- id: gomodel:568b0f9600000284/580685bd00000135
  enabled_by: WB:WBGene00011979
  molecular_function:
    evidence:
    - term: ECO:0000307
      reference: GO_REF:0000015
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2018-11-12'
    provenances: []
    term: GO:0003674
  occurs_in:
    evidence:
    - term: ECO:0000307
      reference: GO_REF:0000015
      provenances:
      - contributor: https://orcid.org/0000-0002-1706-4196
        date: '2021-11-29'
    term: GO:0110165
  part_of:
    evidence:
    - term: ECO:0000270
      reference: PMID:17096597
      provenances:
      - contributor: https://orcid.org/0000-0002-1706-4196
        date: '2021-07-08'
    term: GO:0140367
- id: gomodel:568b0f9600000284/5745387b00000588
  enabled_by: WB:WBGene00012019
  molecular_function:
    evidence:
    - term: ECO:0000314
      reference: PMID:17728253
      provenances:
      - contributor: https://orcid.org/0000-0002-1706-4196
        date: '2019-09-23'
    provenances: []
    term: GO:0004674
  occurs_in:
    evidence:
    - term: ECO:0000314
      reference: PMID:17728253
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2019-07-01'
    term: GO:0009898
  part_of:
    evidence:
    - term: ECO:0000315
      reference: PMID:19371715
      provenances:
      - contributor: https://orcid.org/0000-0002-1706-4196
        date: '2016-10-19'
    term: GO:0140367
  causal_associations:
  - evidence:
    - term: ECO:0000315
      reference: PMID:19371715
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2019-07-02'
    predicate: RO:0002629
    downstream_activity: gomodel:568b0f9600000284/568b0f9600000285
- id: gomodel:568b0f9600000284/5b528b1100002286
  enabled_by: WB:WBGene00006599
  molecular_function:
    evidence:
    - term: ECO:0000501
      reference: GO_REF:0000037
      with_objects:
      - UniProtKB-KW:KW-0723
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2018-09-06'
    - term: ECO:0000315
      reference: PMID:23072806
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2018-09-06'
    - term: ECO:0000501
      reference: GO_REF:0000002
      with_objects:
      - InterPro:IPR000961
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2018-09-06'
    - term: ECO:0000318
      reference: PAINT_REF:24356
      with_objects:
      - PANTHER:PTN000683254
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2018-09-06'
    provenances: []
    term: GO:0004674
  part_of:
    evidence:
    - term: ECO:0000315
      reference: PMID:22470487
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2018-09-06'
    term: GO:0002225
  causal_associations:
  - evidence:
    - term: ECO:0000316
      reference: PMID:19371715
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2019-07-01'
    predicate: RO:0002629
    downstream_activity: gomodel:568b0f9600000284/5745387b00000588
- id: gomodel:568b0f9600000284/57ec3a7e00000119
  enabled_by: WB:WBGene00004758
  molecular_function:
    evidence:
    - term: ECO:0000314
      reference: PMID:11751572
      provenances:
      - contributor: https://orcid.org/0000-0002-1706-4196
        date: '2019-09-23'
    provenances: []
    term: GO:0004708
  occurs_in:
    evidence:
    - term: ECO:0000318
      reference: PMID:21873635
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2019-06-28'
    term: GO:0005737
  part_of:
    evidence:
    - term: ECO:0000315
      reference: PMID:12142542
      provenances:
      - contributor: https://orcid.org/0000-0002-1706-4196
        date: '2020-10-28'
    term: GO:0140367
  causal_associations:
  - evidence:
    - term: ECO:0000315
      reference: PMID:12142542
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2019-05-31'
    predicate: RO:0002629
    downstream_activity: gomodel:568b0f9600000284/568b0f9600000285
- id: gomodel:568b0f9600000284/568b0f9600000285
  enabled_by: WB:WBGene00004055
  molecular_function:
    evidence:
    - term: ECO:0000314
      reference: PMID:20369020
      provenances:
      - contributor: https://orcid.org/0000-0002-1706-4196
        date: '2020-10-28'
    provenances: []
    term: GO:0004707
  occurs_in:
    evidence:
    - term: ECO:0000314
      reference: PMID:20133945
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2019-07-01'
    term: GO:0005829
  part_of:
    evidence:
    - term: ECO:0000315
      reference: PMID:12142542
      provenances:
      - contributor: https://orcid.org/0000-0002-1706-4196
        date: '2020-10-28'
    term: GO:0140367
  causal_associations:
  - evidence:
    - term: ECO:0000314
      reference: PMID:20369020
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2019-05-31'
    predicate: RO:0002629
    downstream_activity: gomodel:568b0f9600000284/568b0f9600000287
- id: gomodel:568b0f9600000284/57ec3a7e00000109
  enabled_by: WB:WBGene00003822
  molecular_function:
    evidence:
    - term: ECO:0000314
      reference: PMID:11751572
      provenances:
      - contributor: https://orcid.org/0000-0002-1706-4196
        date: '2019-09-23'
    provenances: []
    term: GO:0004709
  occurs_in:
    evidence:
    - term: ECO:0000314
      reference: PMID:15625192
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2019-06-28'
    term: GO:0005737
  part_of:
    evidence:
    - term: ECO:0000315
      reference: PMID:12142542
      provenances:
      - contributor: https://orcid.org/0000-0002-1706-4196
        date: '2020-10-28'
    term: GO:0140367
  causal_associations:
  - evidence:
    - term: ECO:0000315
      reference: PMID:12142542
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2019-05-31'
    predicate: RO:0002629
    downstream_activity: gomodel:568b0f9600000284/57ec3a7e00000119
- id: gomodel:568b0f9600000284/5b91dbd100000652
  enabled_by: WB:WBGene00006923
  molecular_function:
    evidence:
    - term: ECO:0000314
      reference: PMID:15116070
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2018-10-08'
    provenances: []
    term: GO:0017017
  occurs_in:
    evidence:
    - term: ECO:0000250
      reference: PMID:15116070
      with_objects:
      - UniProt:Q920R2
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2019-07-01'
    term: GO:0005737
  part_of:
    evidence:
    - term: ECO:0000316
      reference: PMID:22554143
      with_objects:
      - WB:WBGene00002187
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2018-10-08'
    - term: ECO:0000315
      reference: PMID:22554143
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2018-10-08'
    term: GO:1900425
  causal_associations:
  - evidence:
    - term: ECO:0000315
      reference: PMID:22554143
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2018-10-09'
    predicate: RO:0002630
    downstream_activity: gomodel:568b0f9600000284/5b91dbd100000659
  - evidence:
    - term: ECO:0000315
      reference: PMID:15256594
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2019-06-20'
    - term: ECO:0000315
      reference: PMID:22554143
      provenances:
      - contributor: https://orcid.org/0000-0002-1706-4196
        date: '2020-10-28'
    predicate: RO:0002630
    downstream_activity: gomodel:568b0f9600000284/568b0f9600000285
- id: gomodel:568b0f9600000284/5b91dbd100000659
  enabled_by: WB:WBGene00002187
  molecular_function:
    evidence:
    - term: ECO:0000353
      reference: PMID:12435362
      with_objects:
      - WB:WBGene00001599
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2018-10-08'
    - term: ECO:0000353
      reference: PMID:12435362
      with_objects:
      - WB:WBGene00001600
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2018-10-08'
    - term: ECO:0000353
      reference: PMID:23437011
      with_objects:
      - WB:WBGene00001345
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2018-10-08'
    - term: ECO:0000353
      reference: PMID:23437011
      with_objects:
      - WB:WBGene00001345
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2018-10-08'
    provenances: []
    term: GO:0005515
  occurs_in:
    evidence:
    - term: ECO:0000314
      reference: PMID:17699606
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2019-07-01'
    term: GO:0005737
  part_of:
    evidence:
    - term: ECO:0000315
      reference: PMID:22554143
      with_objects:
      - WB:WBGene00002187
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2018-10-08'
    term: GO:1900181
- id: gomodel:568b0f9600000284/568b0f9600000287
  enabled_by: WB:WBGene00000223
  molecular_function:
    evidence:
    - term: ECO:0000250
      reference: PMID:20369020
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2018-10-29'
    provenances: []
    term: GO:0000981
  occurs_in:
    evidence:
    - term: ECO:0000314
      reference: PMID:20369020
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2018-10-29'
    term: GO:0005634
  part_of:
    evidence:
    - term: ECO:0000315
      reference: PMID:20369020
      provenances:
      - contributor: https://orcid.org/0000-0002-1706-4196
        date: '2020-10-28'
    term: GO:0140367
  causal_associations:
  - evidence:
    - term: ECO:0000315
      reference: PMID:20369020
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2018-09-26'
    - term: ECO:0000315
      reference: PMID:19837372
      provenances:
      - contributor: https://orcid.org/0000-0002-3013-9906
        date: '2018-10-31'
    predicate: RO:0002629
    downstream_activity: gomodel:568b0f9600000284/580685bd00000135
objects:
- id: WB:WBGene00006599
  label: tpa-1 Cele
- id: GO:0004674
  label: protein serine/threonine kinase activity
- id: GO:0002225
  label: positive regulation of antimicrobial peptide production
- id: ECO:0000501
  label: evidence used in automatic assertion
- id: ECO:0000315
  label: mutant phenotype evidence used in manual assertion
- id: ECO:0000318
  label: biological aspect of ancestor evidence used in manual assertion
- id: WB:WBGene00006923
  label: vhp-1 Cele
- id: GO:0017017
  label: MAP kinase tyrosine/serine/threonine phosphatase activity
- id: GO:1900425
  label: negative regulation of defense response to bacterium
- id: ECO:0000314
  label: direct assay evidence used in manual assertion
- id: ECO:0000316
  label: genetic interaction evidence used in manual assertion
- id: WB:WBGene00002187
  label: kgb-1 Cele
- id: GO:0005515
  label: protein binding
- id: GO:1900181
  label: negative regulation of protein localization to nucleus
- id: ECO:0000353
  label: physical interaction evidence used in manual assertion
- id: ECO:0000250
  label: sequence similarity evidence used in manual assertion
- id: ECO:0000307
  label: no evidence data found used in manual assertion
- id: GO:0005737
  label: cytoplasm
- id: GO:0005829
  label: cytosol
- id: GO:0009898
  label: cytoplasmic side of plasma membrane
- id: WB:WBGene00000223
  label: atf-7 Cele
- id: WB:WBGene00004055
  label: pmk-1 Cele
- id: WB:WBGene00004758
  label: sek-1 Cele
- id: GO:0004707
  label: MAP kinase activity
- id: GO:0000981
  label: DNA-binding transcription factor activity, RNA polymerase II-specific
- id: GO:0005634
  label: nucleus
- id: GO:0016045
  label: detection of bacterium
- id: GO:0003674
  label: molecular_function
- id: GO:0035591
  label: signaling adaptor activity
- id: WB:WBGene00006575
  label: tir-1 Cele
- id: GO:0004709
  label: MAP kinase kinase kinase activity
- id: WB:WBGene00003822
  label: nsy-1 Cele
- id: GO:0004708
  label: MAP kinase kinase activity
- id: WB:WBGene00012019
  label: dkf-2 Cele
- id: GO:0140367
  label: antibacterial innate immune response
- id: WB:WBGene00011979
  label: sysm-1 Cele
- id: ECO:0000270
  label: expression pattern evidence used in manual assertion
- id: GO:0110165
  label: cellular anatomical entity

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0.11.0

May 13, 2026

0.10.0

Apr 9, 2026

0.9.0

Mar 18, 2026

0.8.0

Mar 6, 2026

0.7.0

Nov 25, 2025

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Nov 18, 2025

0.5.5

Nov 14, 2025

0.5.4

Nov 11, 2025

0.5.3

Oct 24, 2025

0.5.3rc2 pre-release

Aug 15, 2025

0.5.3rc1 pre-release

Aug 13, 2025

0.5.2

Aug 6, 2025

0.5.2rc1 pre-release

Aug 5, 2025

0.5.1

Jun 10, 2025

0.5.0

May 8, 2025

0.4.0

Mar 27, 2025

0.3.0

Feb 7, 2025

0.2.2

Jan 30, 2025

This version

0.2.1

Jan 30, 2025

0.2.0

Dec 11, 2024

0.1.0

Sep 24, 2024

0.0.1

Jul 16, 2024

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