gopher-enrich 0.3.0

Gene ontology enrichment analysis using protein expression.

gopher

Gene ontology enrichment analysis using protein expression.

Gopher uses a Mann-Whitney U Test to look for enriched gene ontology terms that are present when proteins are ranked by a quantitative value, such as the difference between two conditions or the abundance of the protein.

See the documentation at https://TalusBio.github.io/gopher

Installation

Gopher can be pip installed using:

pip install gopher-enrich

TLDR

import gopher                                   # import the package

gopher.test_enrichment(proteins=protein_quant)  # run the enrichment