gpl wrapper
This is a wrapper to run the GRIDSS-PURPLE-LINX tool. The original nextflow pipeline is here. I have modified the docker image to make it compatible with our working environment.
Additionally, hg38 for hmftools is harcoded for the "chr"-prefixed reference genome. So, we have added a previous step to reheader both bams and input vcfs so they also include the prefix. Our modified repo is here
Installation
pip install gpl-wrapper
1 maintainer
Metadata
1 maintainer
Release files for gpl-wrapper 0.1.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
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| gpl_wrapper-0.1.1.tar.gz | 12.5 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| gpl_wrapper-0.1.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 36.4 kB
Release files / gpl_wrapper-0.1.1.tar.gz
| Download URL | gpl_wrapper-0.1.1.tar.gz |
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| Size | 12.5 kB |
| Tags | Source |
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Release files / gpl_wrapper-0.1.1-py3-none-any.whl
| Download URL | gpl_wrapper-0.1.1-py3-none-any.whl |
|---|---|
| Size | 23.8 kB |
| Tags | Python 3 |
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SHA-256 checksum How to use checksums |
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