gradio-cofoldinginput 0.0.9

Component to enter protein and DNA sequences + small molecules for cofolding

---

license: mit title: Cofolding Input sdk: gradio colorFrom: red

gradio_cofoldinginput

Component to enter protein and DNA sequences + small molecules for cofolding

Installation

pip install gradio_cofoldinginput

Usage

import gradio as gr
from gradio_cofoldinginput import CofoldingInput

import json


def predict(input):
    input = json.dumps(input)
    return input

with gr.Blocks() as demo:
    jobname = gr.Textbox(label="Job Name")
    inp=CofoldingInput(label="Input")

    preinput =  {"chains": [
        {
            "class": "DNA",
            "sequence": "ATGCGT",
            "chain": "A",
            "msa": True
        },
        {
            "class": "protein",
            "sequence": "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA",
            "chain": "B",
            "msa": True
        },
        {
            "class": "ligand",
            "name": "ZN",
            "smiles": "",
            "sdf": "",
            "chain": "C"
        },
        {
            "class": "ligand",
            "smiles": "CCCCCCCCCCCCCCCCCCCC",
            "name": "",
            "sdf": "",
            "chain": "D"
        }
    ], "covMods":[]
    }
    # inp2=CofoldingInput(preinput, label="Input prefilled")
    btn = gr.Button("Submit")
    out = gr.HTML()

    gr.Examples([["test",preinput]], inputs=[jobname,inp])

    btn.click(predict, inputs=[inp], outputs=[out])

if __name__ == "__main__":
    demo.launch()

CofoldingInput

Initialization

name	type	default	description
value	dict | None	{"chains": [], "covMods": []}	list of items.
label	str | None	None	The label for this component. Appears above the component and is also used as the header if there are a table of examples for this component. If None and used in a `gr.Interface`, the label will be the name of the parameter this component is assigned to.
info	str | None	None	additional component description.
every	float | None	None	If `value` is a callable, run the function 'every' number of seconds while the client connection is open. Has no effect otherwise. The event can be accessed (e.g. to cancel it) via this component's .load_event attribute.
show_label	bool | None	None	if True, will display label.
container	bool	True	If True, will place the component in a container - providing some extra padding around the border.
scale	int | None	None	relative size compared to adjacent Components. For example if Components A and B are in a Row, and A has scale=2, and B has scale=1, A will be twice as wide as B. Should be an integer. scale applies in Rows, and to top-level Components in Blocks where fill_height=True.
min_width	int	160	minimum pixel width, will wrap if not sufficient screen space to satisfy this value. If a certain scale value results in this Component being narrower than min_width, the min_width parameter will be respected first.
interactive	bool | None	None	if True, will be rendered as an editable textbox; if False, editing will be disabled. If not provided, this is inferred based on whether the component is used as an input or output.
visible	bool	True	If False, component will be hidden.
elem_id	str | None	None	An optional string that is assigned as the id of this component in the HTML DOM. Can be used for targeting CSS styles.
autofocus	bool	False	If True, will focus on the textbox when the page loads. Use this carefully, as it can cause usability issues for sighted and non-sighted users.
autoscroll	bool	True	None
elem_classes	list[str] | str | None	None	An optional list of strings that are assigned as the classes of this component in the HTML DOM. Can be used for targeting CSS styles.
render	bool	True	If False, component will not render be rendered in the Blocks context. Should be used if the intention is to assign event listeners now but render the component later.

Events

name	description
change	Triggered when the value of the CofoldingInput changes either because of user input (e.g. a user types in a textbox) OR because of a function update (e.g. an image receives a value from the output of an event trigger). See .input() for a listener that is only triggered by user input.
input	This listener is triggered when the user changes the value of the CofoldingInput.
select	Event listener for when the user selects or deselects the CofoldingInput. Uses event data gradio.SelectData to carry value referring to the label of the CofoldingInput, and selected to refer to state of the CofoldingInput. See EventData documentation on how to use this event data
submit	This listener is triggered when the user presses the Enter key while the CofoldingInput is focused.
focus	This listener is triggered when the CofoldingInput is focused.
blur	This listener is triggered when the CofoldingInput is unfocused/blurred.

User function

The impact on the users predict function varies depending on whether the component is used as an input or output for an event (or both).

• When used as an Input, the component only impacts the input signature of the user function.
• When used as an output, the component only impacts the return signature of the user function.

The code snippet below is accurate in cases where the component is used as both an input and an output.

• As input: Should return, expects a {str} returned from function and sets textarea value to it.

def predict(
    value: Unknown
) -> dict | None:
    return value