GraphToolbox 0.1.1

A Python toolbox for graph processing and analysis with Graph Neural Network utilities.

GraphToolbox

GraphToolbox is a Python package designed for graph machine learning focused on time-series forecasting. It provides tools for data handling, model building, training, evaluation, and visualization.

Features

• Data handling and preprocessing for graph datasets.
• Various graph neural network models including Graph Convolutional Networks (GCNs), GraphSAGE and Graph Attention Networks (GATs).
• Training and evaluation utilities for graph-based models.
• Visualization tools for graph data and model results.

Convolutions

We benchmarked the entire collection of torch_geometric.nn.conv layers against myGNN, evaluating whether each operator can be instantiated and run end-to-end with standard node-feature inputs and a homogeneous graph structure.

Legend:

• 🟢 = Working (fully compatible with myGNN)
• 🔴 = Skipped (requires the dgNN package, not available on all platforms)
• ⚪️ = Skipped (requires CUDA-specific dependencies or device-restricted libraries)

Convolution Type	Status	Convolutions
GCN / Spectral	🟢	GCNConv, ChebConv, SGConv, SSGConv, LGConv, GCN2Conv, ClusterGCNConv, FAConv
Attention-based	🟢	GATConv, GATv2Conv, SuperGATConv, TransformerConv, AGNNConv, DNAConv
MPNN / Aggregation	🟢	SAGEConv, GENConv, GraphConv, MFConv, LEConv, SimpleConv, EGConv, GravNetConv
MLP-based (GIN-style)	🟢	GINConv, GINEConv
Edge-conditioned	🟢	NNConv, ECConv, CGConv, GMMConv, GeneralConv, XConv
Recurrent / Gated	🟢	GatedGraphConv, ARMAConv, TAGConv
Residual / Deep	🟢	DirGNNConv, AntiSymmetricConv, FiLMConv, ResGatedGraphConv, PDNConv
Spectral / Poly	🟢	MixHopConv, GPSConv, FeaStConv, SplineConv, PANConv
Dynamic aggregators	🟢	PNAConv, EdgeConv, DynamicEdgeConv
Relational	🟢	RGCNConv, RGATConv, FastRGCNConv
Graph-level	🟢	WLConv, SignedConv
Missing optional deps	🔴	FusedGATConv (dgNN)
Heterogeneous graphs	⚪️	HANConv, HGTConv, HEATConv, HeteroConv
Point-cloud	⚪️	PointNetConv, PointConv, PointGNNConv, PointTransformerConv, PPFConv
CuGraph (CUDA only)	⚪️	CuGraphGATConv, CuGraphRGCNConv, CuGraphSAGEConv
Hypergraph	⚪️	HypergraphConv

Detailed statistics per status:

Status	Count	Percentage
🟢	51	78.5 %
🔴	1	1.5 %
⚪️	13	20.0 %
Total Tested	65	100 %

FusedGATConv is not broken; it requires the dgNN package which is not available on all platforms. Installing it will make it pass. Installing torch-cluster, torch-sparse, and torch-spline-conv unlocked DynamicEdgeConv, GravNetConv, XConv, PANConv, and SplineConv.

If you spot a missing convolution, find an incompatibility, or want to help extend support, contributions are warmly welcomed! Feel free to open an issue or submit a PR so we can improve these results.

Installation

The package is available on PyPI:

pip install graphtoolbox

Alternatively, install the latest development version from source:

git clone [e-mail]:eloicampagne/GraphToolbox.git
cd GraphToolbox
pip install .

The geographic-map figures rely on the deprecated basemap package, which is kept out of the core dependencies; install it on demand with pip install graphtoolbox[maps].

GPU support

GraphToolbox runs on CPU, CUDA, or Apple MPS and selects the device automatically at run time (CUDA first, then MPS, then CPU). Override it with the GRAPHTOOLBOX_DEVICE environment variable or graphtoolbox.training.set_device(...). Note that pip install graphtoolbox does not pin a CUDA build: it installs the default PyTorch wheel for your platform, which is the CUDA build on Linux (used automatically if a compatible GPU and driver are present) and the CPU/MPS build on macOS. To force a specific variant, install torch yourself from the appropriate PyTorch index before installing GraphToolbox.

To unlock the full set of supported convolutions, install the optional PyTorch Geometric extensions that match your PyTorch and platform versions. Replace ${TORCH} and ${CUDA} with the appropriate values (e.g. 2.5.1 and cpu):

pip install torch-scatter torch-sparse torch-cluster torch-spline-conv \
    -f https://data.pyg.org/whl/torch-${TORCH}+${CUDA}.html

Without these packages, DynamicEdgeConv, GravNetConv, XConv, PANConv, and SplineConv are unavailable. FusedGATConv additionally requires dgNN, which is not available on all platforms.

Usage

Here is a basic example of how to use GraphToolbox:

from torch_geometric.nn import GATConv

from graphtoolbox.data import DataClass, GraphDataset
from graphtoolbox.models import myGNN
from graphtoolbox.training import Trainer

# Load datasets
out_channels = 48
data = DataClass(path_train='./train.csv', 
                 path_test='./test.csv', 
                 data_kwargs=data_kwargs,
                 folder_config='.')

graph_dataset_train = GraphDataset(data=data, period='train', 
                                   graph_folder='../graph_representations',
                                   dataset_kwargs=dataset_kwargs,
                                   out_channels=out_channels)
graph_dataset_val = GraphDataset(data=data, period='val', 
                                 scalers_feat=graph_dataset_train.scalers_feat, 
                                 scalers_target=graph_dataset_train.scalers_target,
                                 graph_folder='../graph_representations',
                                 dataset_kwargs=dataset_kwargs,
                                 out_channels=out_channels)
graph_dataset_test = GraphDataset(data=data, period='test',
                                  scalers_feat=graph_dataset_train.scalers_feat, 
                                  scalers_target=graph_dataset_train.scalers_target,
                                  graph_folder='../graph_representations',
                                  dataset_kwargs=dataset_kwargs,
                                  out_channels=out_channels)

# Initialize model
conv_class = GATConv
conv_kwargs = {'heads': 2}
params = {'num_layers': 3, 
          'hidden_channels': 364, 
          'lr': 1e-3, 
          'batch_size': 16, 
          'adj_matrix': 'gl3sr', 
          'lam_reg': 0}

model = myGNN(
    in_channels=graph_dataset_train.num_node_features,
    num_layers=params["num_layers"],
    hidden_channels=params["hidden_channels"],
    out_channels=out_channels,
    conv_class=conv_class,
    conv_kwargs=conv_kwargs
)

# Initialize trainer
trainer = Trainer(
    model=model,
    dataset_train=graph_dataset_train,
    dataset_val=graph_dataset_val,
    dataset_test=graph_dataset_test,
    batch_size=params["batch_size"],
    return_attention=False,
    model_kwargs={'lr': params["lr"], 'num_epochs': 200},
    lam_reg=params["lam_reg"]
)

# Train model
pred_model_test, target_test, edge_index, attention_weights = trainer.train(
    plot_loss=True,
    force_training=True,
    save=False,
    patience=75
)

# Evaluate model
trainer.evaluate()

Contributing

Contributions are welcome! Please fork the repository and submit a pull request.

Special thanks to all contributors of the GraphToolbox project:

• Eloi Campagne
• Itai Zehavi

Citation

If you use the GraphToolbox in your work, please cite the corresponding paper:

@article{campagne2025graph,
    author = {Campagne, Eloi and Amara-Ouali, Yvenn and Goude, Yannig and Kalogeratos, Argyris},
    title = {Graph Neural Networks for Electricity Load Forecasting},
    journal={arXiv preprint arXiv:2507.03690},
    year = {2025},
}

License

This project is licensed under the GPL License - see the LICENSE file for details.