GrPPHATI_rs (WIP)
Rust implementation of various GrPPHATI classes, including:
RustRegularPathHomology- an implementation of regular path homology producing a basis in parallel, using custom column types.RustGeneratorSparsifier- a lazy sparsifier written in Rust, meant to work with columns produced byRustRegularPathHomology.RustPreferredSparsifier- a non-lazy sparsifier written in Rust, meant to work with columns produced byRustRegularPathHomology. Sparsifies columns of each dimension in parallel.
Usage
Note RustRegularPathHomology does not produce columns in the same order as RegularPathHomology.
This leads to considerable slow down when using PHATBackend.
As such, the recommended usage is with LoPHATBackend, available in grpphati.
Eirene has not been tested so far.
It is also recommended to use the provided parallel sparsifier.
Good pipelines are provided in grpphati_rs.GrPPH_rs and grpphai_rs.GrPPH_par_wedge_rs.
For example usage, please consult examples/disjoint.py in the repository.
Known issues
- Graphs used with
RustRegularPathHomologymust be integer indexed.
1 maintainer
Metadata
1 maintainer
Release files for grpphati-rs 0.3.1
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Source distribution (sdist)
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Built distributions (wheels)
Total release size: 90.2 MB
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maturin/1.2.3
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Release files / grpphati_rs-0.3.1-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
| Download URL | grpphati_rs-0.3.1-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl |
|---|---|
| Size | 1.5 MB |
| Tags | CPython 3.12 Linux glibc 2.17+ ARM64 |
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SHA-256 checksum How to use checksums |
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No |
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maturin/1.2.3
|
Release files / grpphati_rs-0.3.1-cp312-cp312-manylinux_2_12_i686.manylinux2010_i686.whl
| Download URL | grpphati_rs-0.3.1-cp312-cp312-manylinux_2_12_i686.manylinux2010_i686.whl |
|---|---|
| Size | 1.5 MB |
| Tags | CPython 3.12 Linux glibc 2.12+ x86-32 |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.2.3
|
Release files / grpphati_rs-0.3.1-cp311-none-win_amd64.whl
| Download URL | grpphati_rs-0.3.1-cp311-none-win_amd64.whl |
|---|---|
| Size | 374.3 kB |
| Tags | CPython 3.11 Windows x86-64 |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.2.3
|
Release files / grpphati_rs-0.3.1-cp311-none-win32.whl
| Download URL | grpphati_rs-0.3.1-cp311-none-win32.whl |
|---|---|
| Size | 345.1 kB |
| Tags | CPython 3.11 Windows x86-32 |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.2.3
|
Release files / grpphati_rs-0.3.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
| Download URL | grpphati_rs-0.3.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
|---|---|
| Size | 1.5 MB |
| Tags | CPython 3.11 Linux glibc 2.17+ x86-64 |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.2.3
|
Release files / grpphati_rs-0.3.1-cp311-cp311-manylinux_2_17_s390x.manylinux2014_s390x.whl
| Download URL | grpphati_rs-0.3.1-cp311-cp311-manylinux_2_17_s390x.manylinux2014_s390x.whl |
|---|---|
| Size | 1.7 MB |
| Tags | CPython 3.11 Linux glibc 2.17+ IBM System/390x |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.2.3
|
Release files / grpphati_rs-0.3.1-cp311-cp311-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl
| Download URL | grpphati_rs-0.3.1-cp311-cp311-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl |
|---|---|
| Size | 1.6 MB |
| Tags | CPython 3.11 Linux glibc 2.17+ PowerPC 64-le |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.2.3
|
Release files / grpphati_rs-0.3.1-cp311-cp311-manylinux_2_17_armv7l.manylinux2014_armv7l.whl
| Download URL | grpphati_rs-0.3.1-cp311-cp311-manylinux_2_17_armv7l.manylinux2014_armv7l.whl |
|---|---|
| Size | 1.5 MB |
| Tags | CPython 3.11 Linux glibc 2.17+ ARMv7l |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.2.3
|
Release files / grpphati_rs-0.3.1-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
| Download URL | grpphati_rs-0.3.1-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl |
|---|---|
| Size | 1.5 MB |
| Tags | CPython 3.11 Linux glibc 2.17+ ARM64 |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.2.3
|
Release files / grpphati_rs-0.3.1-cp311-cp311-manylinux_2_12_i686.manylinux2010_i686.whl
| Download URL | grpphati_rs-0.3.1-cp311-cp311-manylinux_2_12_i686.manylinux2010_i686.whl |
|---|---|
| Size | 1.5 MB |
| Tags | CPython 3.11 Linux glibc 2.12+ x86-32 |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.2.3
|
Release files / grpphati_rs-0.3.1-cp310-none-win_amd64.whl
| Download URL | grpphati_rs-0.3.1-cp310-none-win_amd64.whl |
|---|---|
| Size | 374.3 kB |
| Tags | CPython 3.10 Windows x86-64 |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.2.3
|
Release files / grpphati_rs-0.3.1-cp310-none-win32.whl
| Download URL | grpphati_rs-0.3.1-cp310-none-win32.whl |
|---|---|
| Size | 345.1 kB |
| Tags | CPython 3.10 Windows x86-32 |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.2.3
|
Release files / grpphati_rs-0.3.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
| Download URL | grpphati_rs-0.3.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
|---|---|
| Size | 1.5 MB |
| Tags | CPython 3.10 Linux glibc 2.17+ x86-64 |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.2.3
|
Release files / grpphati_rs-0.3.1-cp310-cp310-manylinux_2_17_s390x.manylinux2014_s390x.whl
| Download URL | grpphati_rs-0.3.1-cp310-cp310-manylinux_2_17_s390x.manylinux2014_s390x.whl |
|---|---|
| Size | 1.7 MB |
| Tags | CPython 3.10 Linux glibc 2.17+ IBM System/390x |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.2.3
|
Release files / grpphati_rs-0.3.1-cp310-cp310-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl
| Download URL | grpphati_rs-0.3.1-cp310-cp310-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl |
|---|---|
| Size | 1.6 MB |
| Tags | CPython 3.10 Linux glibc 2.17+ PowerPC 64-le |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.2.3
|
Release files / grpphati_rs-0.3.1-cp310-cp310-manylinux_2_17_armv7l.manylinux2014_armv7l.whl
| Download URL | grpphati_rs-0.3.1-cp310-cp310-manylinux_2_17_armv7l.manylinux2014_armv7l.whl |
|---|---|
| Size | 1.5 MB |
| Tags | CPython 3.10 Linux glibc 2.17+ ARMv7l |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.2.3
|
Release files / grpphati_rs-0.3.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
| Download URL | grpphati_rs-0.3.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl |
|---|---|
| Size | 1.5 MB |
| Tags | CPython 3.10 Linux glibc 2.17+ ARM64 |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.2.3
|
Release files / grpphati_rs-0.3.1-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl
| Download URL | grpphati_rs-0.3.1-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl |
|---|---|
| Size | 1.5 MB |
| Tags | CPython 3.10 Linux glibc 2.12+ x86-32 |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.2.3
|
Release files / grpphati_rs-0.3.1-cp39-none-win_amd64.whl
| Download URL | grpphati_rs-0.3.1-cp39-none-win_amd64.whl |
|---|---|
| Size | 374.0 kB |
| Tags | CPython 3.9 Windows x86-64 |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.2.3
|
Release files / grpphati_rs-0.3.1-cp39-none-win32.whl
| Download URL | grpphati_rs-0.3.1-cp39-none-win32.whl |
|---|---|
| Size | 344.4 kB |
| Tags | CPython 3.9 Windows x86-32 |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.2.3
|
Release files / grpphati_rs-0.3.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
| Download URL | grpphati_rs-0.3.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
|---|---|
| Size | 1.5 MB |
| Tags | CPython 3.9 Linux glibc 2.17+ x86-64 |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.2.3
|
Release files / grpphati_rs-0.3.1-cp39-cp39-manylinux_2_17_s390x.manylinux2014_s390x.whl
| Download URL | grpphati_rs-0.3.1-cp39-cp39-manylinux_2_17_s390x.manylinux2014_s390x.whl |
|---|---|
| Size | 1.7 MB |
| Tags | CPython 3.9 Linux glibc 2.17+ IBM System/390x |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.2.3
|
Release files / grpphati_rs-0.3.1-cp39-cp39-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl
| Download URL | grpphati_rs-0.3.1-cp39-cp39-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl |
|---|---|
| Size | 1.6 MB |
| Tags | CPython 3.9 Linux glibc 2.17+ PowerPC 64-le |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.2.3
|
Release files / grpphati_rs-0.3.1-cp39-cp39-manylinux_2_17_armv7l.manylinux2014_armv7l.whl
| Download URL | grpphati_rs-0.3.1-cp39-cp39-manylinux_2_17_armv7l.manylinux2014_armv7l.whl |
|---|---|
| Size | 1.5 MB |
| Tags | CPython 3.9 Linux glibc 2.17+ ARMv7l |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.2.3
|
Release files / grpphati_rs-0.3.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
| Download URL | grpphati_rs-0.3.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl |
|---|---|
| Size | 1.5 MB |
| Tags | CPython 3.9 Linux glibc 2.17+ ARM64 |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.2.3
|
Release files / grpphati_rs-0.3.1-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl
| Download URL | grpphati_rs-0.3.1-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl |
|---|---|
| Size | 1.5 MB |
| Tags | CPython 3.9 Linux glibc 2.12+ x86-32 |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.2.3
|
Release files / grpphati_rs-0.3.1-cp38-none-win_amd64.whl
| Download URL | grpphati_rs-0.3.1-cp38-none-win_amd64.whl |
|---|---|
| Size | 373.5 kB |
| Tags | CPython 3.8 Windows x86-64 |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.2.3
|
Release files / grpphati_rs-0.3.1-cp38-none-win32.whl
| Download URL | grpphati_rs-0.3.1-cp38-none-win32.whl |
|---|---|
| Size | 344.8 kB |
| Tags | CPython 3.8 Windows x86-32 |
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maturin/1.2.3
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Release files / grpphati_rs-0.3.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
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Release files / grpphati_rs-0.3.1-cp38-cp38-manylinux_2_17_s390x.manylinux2014_s390x.whl
| Download URL | grpphati_rs-0.3.1-cp38-cp38-manylinux_2_17_s390x.manylinux2014_s390x.whl |
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Release files / grpphati_rs-0.3.1-cp38-cp38-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl
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Release files / grpphati_rs-0.3.1-cp38-cp38-manylinux_2_17_armv7l.manylinux2014_armv7l.whl
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Release files / grpphati_rs-0.3.1-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
| Download URL | grpphati_rs-0.3.1-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl |
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No |
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maturin/1.2.3
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Release files / grpphati_rs-0.3.1-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl
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Release files / grpphati_rs-0.3.1-cp37-none-win_amd64.whl
| Download URL | grpphati_rs-0.3.1-cp37-none-win_amd64.whl |
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| Size | 372.7 kB |
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maturin/1.2.3
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Release files / grpphati_rs-0.3.1-cp37-none-win32.whl
| Download URL | grpphati_rs-0.3.1-cp37-none-win32.whl |
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Release files / grpphati_rs-0.3.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
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| Tags | CPython 3.7 CPython 3.7 pymalloc Linux glibc 2.17+ x86-64 |
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No |
| Uploaded via |
maturin/1.2.3
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Release files / grpphati_rs-0.3.1-cp37-cp37m-manylinux_2_17_s390x.manylinux2014_s390x.whl
| Download URL | grpphati_rs-0.3.1-cp37-cp37m-manylinux_2_17_s390x.manylinux2014_s390x.whl |
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| Tags | CPython 3.7 CPython 3.7 pymalloc Linux glibc 2.17+ IBM System/390x |
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No |
| Uploaded via |
maturin/1.2.3
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Release files / grpphati_rs-0.3.1-cp37-cp37m-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl
| Download URL | grpphati_rs-0.3.1-cp37-cp37m-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl |
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No |
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maturin/1.2.3
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Release files / grpphati_rs-0.3.1-cp37-cp37m-manylinux_2_17_armv7l.manylinux2014_armv7l.whl
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No |
| Uploaded via |
maturin/1.2.3
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Release files / grpphati_rs-0.3.1-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
| Download URL | grpphati_rs-0.3.1-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl |
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| Tags | CPython 3.7 CPython 3.7 pymalloc Linux glibc 2.17+ ARM64 |
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maturin/1.2.3
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Release files / grpphati_rs-0.3.1-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl
| Download URL | grpphati_rs-0.3.1-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl |
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| Size | 1.5 MB |
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No |
| Uploaded via |
maturin/1.2.3
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Security for grpphati-rs 0.3.1
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