GSHAPA: Gene Set Analysis for Single-Cell RNA-seq Using Random Forest and SHAP Values

This Python package Gene Set Analysis for Single-Cell RNA-seq Using Random Forest and SHAP Values

pip install gshapa

Check the jupyter notebook tutorials located in the tutorial folder

simulator.ipynb for the assessment of the method on synthetic data
MS-dataset-RF-1percent.ipynb, DN-RF-1percent.ipynb, DII-RF-1percent.ipynb, COVID-RF-1percent.ipynb and AD-RF-1percent.ipynb for different bio-medical applications

For bug reports and feedback do not hesitate to contact the authors

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