Skip to main content

Fast Cython-backed parsing for GTF attribute columns.

Project description

gtfreader

Fast GTF reading into pandas DataFrames.

Install

python -m pip install -e .

Example

from gtfreader import read_gtf

df = read_gtf("annotation.gtf")
print(df.columns)
print(df.head())

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

gtfreader-0.2.0.tar.gz (7.4 kB view details)

Uploaded Source

Built Distributions

If you're not sure about the file name format, learn more about wheel file names.

gtfreader-0.2.0-cp313-cp313-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (215.1 kB view details)

Uploaded CPython 3.13manylinux: glibc 2.17+ x86-64manylinux: glibc 2.5+ x86-64

gtfreader-0.2.0-cp312-cp312-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (150.0 kB view details)

Uploaded CPython 3.12manylinux: glibc 2.17+ x86-64manylinux: glibc 2.5+ x86-64

File details

Details for the file gtfreader-0.2.0.tar.gz.

File metadata

  • Download URL: gtfreader-0.2.0.tar.gz
  • Upload date:
  • Size: 7.4 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.1.0 CPython/3.13.7

File hashes

Hashes for gtfreader-0.2.0.tar.gz
Algorithm Hash digest
SHA256 59c0dece31c8fcb2b398beb247fd6b6214d0a20bd6122987ed5fd67efb11b61d
MD5 ec57c9515fa2e087d5854f16cc6fa9b6
BLAKE2b-256 b4d094d7c3a8140d6d8df281b22ed91283c2f2797d390c0d3af2425d6c1b69b5

See more details on using hashes here.

File details

Details for the file gtfreader-0.2.0-cp313-cp313-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.

File metadata

File hashes

Hashes for gtfreader-0.2.0-cp313-cp313-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm Hash digest
SHA256 e98c7c4e5c2e2d44341261ab3bd8bb47846b4cf6b494c97fc57e0b6a886e9b5d
MD5 89165950a481071888e9c33db5810d05
BLAKE2b-256 b356239b5706022121ddee92b036fe51fd93d0f482c7efe386cf08b4ec894a66

See more details on using hashes here.

File details

Details for the file gtfreader-0.2.0-cp312-cp312-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.

File metadata

File hashes

Hashes for gtfreader-0.2.0-cp312-cp312-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm Hash digest
SHA256 77a112f972ed52ac7d37fe5dd13df2cb954a23905ad1f31a50a96a09bf50d839
MD5 ecb43287552570ec9a3d5af44e7fa838
BLAKE2b-256 deba08a7e384c2e33074e4bbd948e275e2a391eb9ced2aa65609e2708f81059e

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page