gwyddionpy
Read any raw scanning probe microscopy (SPM) file that Gwyddion supports —
around 170 vendor formats — into Python as NumPy arrays plus metadata
dictionaries. Pure Python: the parsing is done by the gwyconvert helper
binary, run as a subprocess.
import gwyddionpy
data = gwyddionpy.load("scan.spm")
data.channels["Height"].data # numpy array, physical values
data.metadata # vendor metadata
data.to_json("scan.json") # metadata only, no pixel data
data.to_hdf5("scan.h5") # optional: pip install 'gwyddionpy[hdf5]'
gwyconvert is installed separately, most simply with
pip install "gwyddionpy[converter]". See the
repository README for the other
options and for the licensing split (this package is Apache-2.0; the
converter is GPL-2.0-or-later).
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