The script h5xp_extractor.py extracts wave data from an Igor Pro HDF5 file (h5px).
It exports all or selected data folders and mirrors the folder structure of source file.
Datasets are exported as follows:
- 1D waves: XY pairs (scaling included) to .txt files
- 2D waves: lossless .tif images (preserving bit resolution).
- 3D waves: .tif stacks (preserving bit resolution)
- String, variables and textwaves are currently ignored.
A detailed export .log files is written in the root export directory.
usage: h5xp_extractor.py [-h] [-r ROOT] [-m META] h5px outdir
Metadata are written in README.txt files for every (sub-)folder (default, optionally use -m 0 (--meta) flag to skip README files).
Set the optional flag -r RootFolder (--root) to select another base "root" folder for the export. Use single quotes for literal names (names with special characters and spaces) and a semicolon (:) as a directory separator (e.g. folder1:Sample123:'Dataset after heating').
To export only the subfolder 'Dataset after heating' of the parent folder Sample123, use the optional argument -r Sample123:'Dataset after heating'.
N.B: Skip the root: folder (Igor's root folder) when using the -r to specify Igor Pro folders
positional arguments:
- h5px Igor Pro .h5xp file. Partial or full path
- outdir Output folder (create/overwrite)
optional arguments:
- -h, --help show this help message and exit
- -r ROOT, --root ROOT Root folder
- -m META, --meta META Export metadata (0 = No, 1 = Yes [default])
1 maintainer
Metadata
1 maintainer
Release files for h5xp-extractor 0.1.0
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
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| h5xp_extractor-0.1.0.tar.gz | 5.2 kB | Without provenance | Details for h5xp_extractor-0.1.0.tar.gz |
Built distribution (wheel)
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| h5xp_extractor-0.1.0-py3-none-any.whl | Python 3 | none | any | Details for h5xp_extractor-0.1.0-py3-none-any.whl |
Total release size: 11.0 kB
Release files / h5xp_extractor-0.1.0.tar.gz
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| Size | 5.2 kB |
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Release files / h5xp_extractor-0.1.0-py3-none-any.whl
| Download URL | h5xp_extractor-0.1.0-py3-none-any.whl |
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| Size | 5.8 kB |
| Tags | Python 3 |
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